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9 protocols using alexafluor 488 f ab 2 fragment of goat anti mouse igg h l

1

Characterizing Antibody Responses via Indirect Immunofluorescence

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Indirect immunofluorescence assays (IFA) using both live and air-dried sporozoites were used to characterize and titrate antibody responses. Briefly, for live-sporozoite IFAs, 40,000 parasites were incubated on ice with different sera dilutions. Sporozoites were then washed 3 times with cold PBS with 1% BSA, suspended in 0.2 ml and placed into the well of a Lab-Tek chambered coverglass (Thermo Scientific Nunc, Rochester, NY). The chamber was then spun at 300 x G for 2 min and, after discarding the supernatant, 0.2 ml of PBS with 4% Paraformaldehyde (Sigma, Saint Louis, MO) were added. Samples were incubated for 1 h at room temperature, washed 3 times with PBS and incubated with secondary antibody [AlexaFluor 488 F(ab’)2 fragment of goat anti-mouse IgG(H+L); 2 mg/ml; Invitrogen] for 30 min. Samples were then washed and green-fluorescent sporozoites were visualized using a Nikon Eclipse 90i fluorescent microscope. IFAs using air-dried sporozoites were performed as previously described [17 (link)].
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2

Indirect IFA for Anti-CSP Titers

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Indirect IFA were used to assess anti-CSP titers in P. falciparum or transgenic sporozoites. In brief, poly-L-lysine-treated slides (Tekdon Inc., Myakka City, FL) were coated with a sporozoite suspension (4–6 × 105 parasites/ml) and allowed to air dry at room temperature. Polyclonal serum samples were then diluted in 1% BSA-PBS and incubated on slides for 30 min at room temperature in a humidity chamber. Slides were then washed with PBS-1% BSA and a secondary-antibody solution [AlexaFluor 488 F(ab′)2 fragment of goat anti-mouse IgG(H+L); 2 mg/ml; Invitrogen] was added for 30 min at room temperature. Fluorescent sporozoites were visualized using an upright fluorescence microscope (Nikon Eclipse 90i).
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3

Indirect Immunofluorescence Assay of Sporozoite Titers

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Indirect immunofluorescence assays (IFA) were used to assess anti-CSP titers in P. falciparum or transgenic sporozoites. In brief, poly-L-lysine-treated slides (Tekdon Inc., Myakka City, FL) were coated with a sporozoite suspension (4–6 × 105 parasites/ml) and allowed to air dry at room temperature. Polyclonal serum samples were then diluted in 1% BSA-PBS and incubated on slides for 30 min at room temperature in a humidity chamber. Slides were then washed with PBS-1% BSA and a secondary-antibody solution [AlexaFluor 488 F(ab′)2 fragment of goat anti-mouse IgG(H+L); 2 mg/ml; Invitrogen] was added for 30 min at room temperature. Fluorescent sporozoites were visualized using an upright fluorescence microscope (Nikon Eclipse 90i).
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4

Immunofluorescence Staining of hTERT-HSC

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Monolayer cultures of hTERT-HSC were fixed in 4% paraformaldehyde (PFA) for 15 minutes, followed by permeabilization with 0.1% Triton-X-100 for 20 minutes. Blocking was performed with 1% BSA in PBS for 60 minutes and washing with PBS; all steps were performed at RT. Primary antibody against αSMA (Sigma, A5228, dilution 1:200) and secondary antibody Alexa Fluor® 488 F(ab')2 Fragment of Goat Anti-Mouse IgG (H+L) (Invitrogen, A11017, dilution 1:400) were used for the staining.
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5

Immunofluorescence Assay for Malaria Parasites

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Immunofluorescence assays (IFAs) were performed using air-dried sporozoites or ookinetes obtained from mosquito midguts dissected 24 h after feeding on an infectious blood meal. Briefly, a sporozoite suspension (4 × 105 to 6 × 105 sporozoites/ml) or ookinete suspension was air dried at room temperature on poly-l-lysine-coated slides (Tekdon Inc., Myakka City, FL). Parasites were fixed for 30 min using a 2% (wt/vol) paraformaldehyde (Sigma, St. Louis, MO)–1× phosphate-buffered saline (PBS) solution and washed 2 times. Sporozoites were then permeabilized for 30 min using a 0.1% (vol/vol) Triton (Roche, Mannheim, Germany)–1× PBS solution and washed. Antibody or serum samples diluted in 1% (wt/vol) bovine serum albumin (BSA) (Sigma, St. Louis, MO)–1× PBS (1% BSA–PBS) were incubated for 30 min at room temperature. Slides were then washed with 1% BSA–PBS and incubated for 30 min at room temperature with a secondary-antibody solution [Alexa Fluor 488 F(ab′)2 fragment of goat anti-mouse IgG(H+L); 2 mg/ml; (Invitrogen)]. Fluorescent sporozoites and ookinetes were visualized under an upright fluorescence microscope (Nikon Eclipse 90i).
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6

Antibody Protocol for Cell Signaling

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Antibodies against the following proteins were used in this study: GAPDH (Santa Cruz, Dallas, TX, USA), LAMIN B1 (MBL, Tokyo, Japan), PARIS (Millipore), PARIS (Proteintech, Chicago, IL, USA), PGC-1α (Millipore), PDGFRα (R&D, Minneapolis, MN, USA), PPARγ (Santa Cruz) HRP-conjugated F(ab’)2 fragment of goat anti-rabbit IgG (Jackson ImmunoResearch), HRP-conjugated F(ab’)2 fragment of goat anti-mouse IgG (Jackson ImmunoResearch), HRP-conjugated F(ab’)2 fragment of donkey anti-goat IgG (Jackson ImmunoResearch), Alexa Fluor® 594 F(ab’)2 fragment of goat anti-mouse IgG (Invitrogen, Waltham, MA, USA), Alexa Fluor™ 488 F(ab’)2 fragment of goat anti-mouse IgG (H + L) (Invitrogen), and Alexa Fluor™ 594 F(ab’)2 fragment of goat anti-rabbit IgG (H + L) (Invitrogen).
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7

PMA-Induced U937 Cell Differentiation

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U937 cells were differentiated with 20 nM PMA or DMSO (control) at 5×105 cells/ml/well for 24–72 h under normal cell culture conditions. At each time point 4 wells were washed once with cold PBS and dislodged with Accutase 200µl/well for 30 minutes. 5×105cells/tube were washed twice with 500µl/tube cold Hepes buffer containing 3% BSA. Cells were blocked with 50µl buffer containing Human TruStain FcX (50µl/ml, Biolegend, San Diego, CA, USA) for 10 minutes at RT. After blocking, 50µl monoclonal anti PCI antibody (4PCI; Technoclone, Vienna, Austria) or mouse monoclonal IgG1 isotype control (R&D Systems, Minneapolis, MN, USA) were added to reach a final concentration of 30µg/ml and incubated for 1 h RT. Cells were washed twice and incubated with 50µl secondary Alexa Fluor 488 F(ab')2 fragment of goat anti-mouse IgG (H+L) (diluted 1∶1000, Invitrogen, Life Technologies, Carlsbad, CA, USA) for 45 minutes at RT. After washing, cells were fixed in 1% PFA and stored in the dark until FACS analysis. PCI detection was quantified by the mean fluorescent intensity multiplied with the percentage of Alexa 488 positive cells. The isotype control was substracted.
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8

Chlamydia MOMP Antibody Binding Assay

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50 μL of E. coli cell culture (at ~1x109 cells/mL) that recombinantly expresses Chlamydia MOMP was incubated with 50 μL of mouse sera generated in-house against Chlamydia EBs at a dilution of 1:250 for 1 h at room temperature in a 96 well plate. After incubation, the cells were washed with 1 mL phosphate buffered saline (PBS) and stained with 100 μL of a fluorescence labeled secondary antibody (Alexa Fluor-488 F(ab)’2 fragment of goat anti-mouse IgG (H + L), Life Technologies) at a dilution of 1:100. The stained cells were washed twice and re-suspended in PBS for flow cytometric analysis (Guava Technologies). Data analyses were performed with CytoSoft 5.3 software (Guava Technologies).
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9

Antibody Production and Immunofluorescence Labeling

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Monoclonal mouse to Tn (5F4, IgM), mouse to T (3C9, IgM), mouse to STn (3F1, IgG), mouse to GalNAc-T2 (4C4, IgG) mouse to β4Gal-T1 (2F5, IgG) and polyclonal rabbit to gC-1 (KF922, 1:700) antibodies were produced as previously described [24 (link), 91 (link)]. Rabbit anti-giantin (1:500) and rat anti-GRP94 (1:50) were purchased from Abcam. FITC-conjugated HPA (Helix pomatia agglutinin, 1:2000) was from Invitrogen. FITC-conjugated polyclonal rabbit anti-HSV-1 antibody was purchased from DAKO (1:40). Alexa Fluor 488 F(ab')2 fragment of Goat anti-Mouse IgG (H+L) (1:500), Alexa Fluor 546 Goat anti-Mouse IgM (μ chain) (1:500) were from Life Technologies. FITC-conjugated polyclonal Goat anti-Mouse antibody (1:100) and TRITC-conjugated Swine anti-Rabbit antibody (1:200) were from DAKO. Alexa Fluor 647 Goat anti-Mouse IgM (μ chain) was purchased from Life Technologies.
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