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6 protocols using 4g10 platinum

1

Insulin and IGF1 Receptor Activation

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Primary fibroblasts were serum-starved for 18 h before treatment with 100 nM insulin for 5 min. Cells were lysed in 1× lysis buffer (20 mM Tris–HCl (pH 7.5), 150 mM NaCl, 1 mM Na2EDTA, 1 mM EGTA, 1% Triton; Cell Signaling) supplemented with 1× COMPLETE protease inhibitors (Roche) and 1× phosphatase inhibitors I and II (Sigma-Aldrich). Cell lysates containing 150 μg of total protein were incubated with 5 μg α-INSR antibody (Cell Signaling, 3025), or 5 μg α-IGF1R antibody (Cell Signaling, 3018) at 4°C overnight. Immunocomplex was pulled down using Protein A-Sepharose (GE Healthcare). Input and immunoprecipitation samples were analyzed by Western blot using α-phosphotyrosine antibody (1:1,000; Millipore, 4G10 Platinum), or the above α-INSR (1:1,000) and α-IGF1R (1:1,000) antibodies. Twenty percent of input lysates were loaded as a control.
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2

Profiling PEAR1 Phosphorylation and Interactors

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Western blotting was performed essentially as described (8 (link)) using the primary antibodies PEAR1-EC antibody (R&D Systems), PEAR1-EC antibody (Santa Cruz Biotechnology), FcεR1α antibody (LifeSpan Biosciences), anti-PLCγ2 (Sigma), anti-PLCγ2-P (Cell Signaling Technology), anti-AKT-P (Cell Signaling Technology), and anti-phosphoprotein (Tyr(P)) 4G10 Platinum (Millipore). After adding horseradish peroxidase-conjugated secondary antibodies (Dako), immunoreactive bands were visualized by ECL (Amersham Biosciences). PEAR1 phosphorylation on Tyr residues, referred to as PEAR1-P, was evaluated after immunoprecipitation with PEAR1-EC antibody and detection of Tyr(P) by 4G10 Platinum as previously described (8 (link)).
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3

Immunoprecipitation of GFP-tagged proteins

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For each immunoprecipitation, HeLa cells were lysed after reaching 80% confluency, using 500 μl ice-cold extraction buffer containing 20 mM HEPES, pH 7.5, 10 mM NaCl, 15 mM MgCl2, 10 mM NaF, 1 mM EDTA, 1 mM Na3VO4, 0.5% (w/v) Nonidet-P-40, supplemented with protease and phosphatase inhibitors cocktail (Roche). After 30 min of cell lysis on ice in the extraction buffer, the samples were centrifuged at 6,000g for 30 min at 4 °C. The supernatants were then normalized to 500 μg and incubated under rotation at 4 °C with 1.3 μg anti-GFP antibody, as indicated for 2 h or O/N, before addition of protein A/G-Sepharose for a further 30 min. When using the anti-phospho-tyrosine antibody conjugated to the agarose matrix (4G10 Platinum, Millipore), the resin was first equilibrated in extraction buffer and then 20 μl of resuspended resin was used for each sample, incubating O/N on a rotating shaker. The beads were collected and washed twice with 500 μl ice-cold complete extraction buffer, and twice with 500 μl ice-cold extraction buffer without detergent. The western blots were visualized using the ECL reagents (GE Healthcare), according to the manufacturer's instructions for ECL-based detection. Where stated, band intensities were quantified using Quantity One software (Bio-Rad Laboratories). Full-scan images of all western blotting data are reported in Supplementary Fig. 6.
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4

Quantitative Phosphotyrosine Profiling

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After 2D PAGE electrophoresis the gels were placed in a ChemiDoc Touch Imaging System (Bio-Rad) and activated for 45 s in order to enable stain-free visualization of the total proteins. The proteins were then electrotransferred from the gels onto a 0.45 µm nitrocellulose membranes (60 V for 2 h in a Bio-Rad Mini Protean II trans-blot cell operating in a cold room) and the stain-free quantitative images of the transferred proteins were captured in the ChemiDoc Touch Imaging System (Bio-Rad). Membranes were then blocked for 1 h in a 2% skim milk dissolved in a tris-buffered saline supplemented with 0.05% of Tween-20 (TBS-T), and incubated for 2 h in 1:2 000 anti-phosphotyrosine primary antibody (4G10 Platinum, Millipore). After extensive washing in TBS-T, the membranes were incubated for 1 h in 1:30 000 anti-mouse HRP Conjugate secondary antibodies (Bio-Rad). Following the extensive washing in TBS-T the membranes were developed with the Clarity Western ECL Substrate (Bio-Rad) and the chemiluminescence of the phosphotyrosines was captured in ChemiDoc Touch Imaging System (Bio-Rad). The obtained images were analyzed in the Image Lab 5.0 software (Bio-Rad) and the stain-free images of the total proteins transferred to the membranes were used to normalize the signal from the separate samples.
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5

Sperm Tyrosine Phosphorylation Analysis

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Sperm samples were washed 3 times by centrifugation (350× g for 10 min at room temperature) with a PBS buffer supplemented with 1 mM sodium orthovanadate, which served as a tyrosine phosphatase inhibitor. Sperm pellets were suspended in Laemmli buffer, boiled for 10 min and centrifuged at 14,000× g for 10 min to remove cell debris. Electrophoresis SDS-PAGE was carried out using 12% Mini-PROTEAN TGX Stain-Free Precast Gels (Bio-Rad, Hercules, CA, USA). The stain-free gels were activated for 45 s and scanned in the ChemiDoc Touch Imaging System (Bio-Rad). Proteins from the gel were then electrotransferred to a nitrocellulose membrane and scanned again to obtain a stain-free image of all the transferred proteins. The membranes were blocked overnight in a cold room with a 2% skim milk dissolved in PBST (PBS with 0.1% Tween-20). Tyrosine phosphorylation of the proteins was detected using primary antibodies 4G10 Platinum (Sigma-Aldrich, St. Louis, MO, USA) diluted 1:2000 in PBST and HRP-conjugated Immun-Star anti-mouse secondary antibodies diluted 1:25,000 in PBST (Bio-Rad) and visualized using Clarity Western ECL Substrate (Bio-Rad). The stain-free blot image of total proteins, captured after a Western blot, was used as a loading control.
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6

Sperm Protein Phosphotyrosine and Acrosin Assay

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To measure the protein phosphotyrosine and acrosine availability, cell aliquots were fixed, permeabilized and blocked as described above (section actin polymerization). Subsequently, the samples were incubated for 1 h with specific anti-phosphotyrosine (4G10 Platinum, Sigma‒Aldrich) or anti-acrosine (ACR-2, Exbio, Praha, Czech Republic) primary antibodies diluted 1:100 in PBS with 1% BSA. After two washes in PBS, sperm cells were incubated with FITC-conjugated anti-mouse IgG secondary antibodies (Sigma‒Aldrich) diluted 1:100 in PBS with 1% BSA for another hour. Before the analyses, sperm cells were washed twice in PBS and diluted to a final concentration of 350 cells/µl. A blue 488 nm laser was used to excite the fluorescence of the labeled cells, and the emitted light was captured using a Green-B 525/30 nm filter.
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