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18 protocols using v750 pro scanner

1

Cell Migration and Invasion Assay

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Migration and invasion assays were performed by using 24-well Transwell plates (8 µm pore size, Corning, NY, USA). The cell suspension in the culture medium without FBS was seeded onto the membrane of Transwells and Matrigel-coated Transwells to perform the migration and invasion assays, respectively. The lower chambers were filled with the complete medium containing FBS. After 48 h, the Transwells were incubated in 0.1% crystal violet to stain the cells. Nonmigrated or noninvasive cells on the upper layers of the Transwells were removed by a cotton swab. Stained the migratory and invasive cells located on the bottom layers of the Transwells were scanned by EPSON V750 PRO scanner. ImageJ 1.47 software (NIH, Bethesda, MD, USA) was used to quantify the results.
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2

Transwell Assay for Migratory Ability

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A 24-well transwell plate (8-μm pore size, Corning) was used to measure the migratory ability of the cells. A total of 2×105 cells were plated in the top chamber lined with a non-coated membrane in penicillin and streptomycin-free medium. After 2 hours, the cells were transfected with 10 nM mimic hsa-miR-524-5p or the negative control. After incubation for 48 hours, the migratory cells on the underside of the membrane were stained with 0.1% crystal violet for 5 minutes and washed with H2O; the membrane was scanned using an EPSON V750 PRO scanner. The crystal violet was destained with methanol for 15 minutes, and the absorbance values were measured at OD570. All measured values were detected by Synergy HT (BioTek).
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3

Chemotaxis Analysis of RAW264.7 Cells

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The chemotaxis analysis was according to our previous studies with some modifications [23 (link)]. A 24-well Transwell plate (8 μm pore size, Corning, NY, USA) was used to measure the chemotactic ability of the RAW274.7 cells. HK-2 cells were added into the lower chamber and transfected with a vector carrying a scrambled or the shVHL [24 (link)] sequence by electroporation. After incubation for 48 hours, the cells were treated with the indicated inhibitors for 24 hours in a serum-free medium supplemented with 5% bovine serum albumin (BIONOVAS, Toronto, Canada). Then, 1 × 105 RAW264.7 cells were added to the upper chamber with an uncoated membrane in a serum-free medium supplemented with 5% bovine serum albumin (BIONOVAS, Toronto, Canada). In separate experiments, RAW264.7 cells were exposed to recombinant human lipocalin 2/NGAL protein (rhLCN2) (Novus Biologicals, CO, USA) added to the serum-free medium and their migration measured. After 24 hours, the migratory cells on the underside of the membrane of the upper chamber were stained with 0.1% crystal violet for 5 minutes, washed with H2O, and scanned using an EPSON V750 PRO scanner. The cells were destained for crystal violet with methanol for 15 minutes and measured at OD570 with the Synergy HT (BioTek, VT, USA).
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4

Quantitative Analysis of Purified Tubulin Subunits

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Defined amounts of S. purpuratus B(αβ)-tubulin, purified to >99% (59 (link)), were electrophoresed; gels were stained and destained as above. Gels were digitized as tiff files with an Epson V750 Pro scanner. A transparent step wedge (0.20 density steps; part no. T2120CC; Stouffer Graphics Arts, Mishawaka, IN) and ImageJ (rsbweb.nih.gov) were used to integrate the stain densities of selected polypeptides. The ratio of tubulin/stain intensity was quantifiable from 0.2 to 10 μg/subunit/SDS-PAGE lane. Molar ratios were calculated by dividing the integrated staining intensity of a given polypeptide band by its molecular mass.
Two-dimensional IEF/SDS-PAGE was performed (69 (link)), using 8 m urea, 2% CHAPS, 0.4% DTT, and 0.5% IPG buffer, and separated on 13-cm immobilized pH 3–10 nonlinear gradient dry strips (GE Healthcare) for 34–44 kV-h, followed by 10% SDS-PAGE, and stained with Coomassie Brilliant Blue G-250 (Sigma). Mass spectrometry analysis was performed as described previously (70 (link)).
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5

Quantifying Cytochrome c Oxidase Activity

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Cytochrome c oxidase activity was assayed on cell membrane microarrays from a human tissue collection. CMMAs were incubated in the presence of 1.3 mM of DAB and 0.01% of cytochrome c in phosphate buffer (0.1 M; pH 7.4) for 16 h at 37 °C in darkness. After the incubation time, the reaction was stopped by a dipping in dH2O. Once dried, the CMMA color signal was acquired with an Epson V750 pro scanner, and digital images were analyzed with the software Adobe Photoshop CS5 (Adobe Systems Incorporated, Mountain View, CA, USA) and quantified using software ImageScanner (IMG Pharma S.L, Derio, Spain).
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6

Characterizing Yield and Root Traits in Mutant Lines

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Four yield-related traits were assessed in T1 homozygous mutant lines and control plants: the number of spikes, number of grains, grain weight, and 1000-grain weight, which was calculated by multiplying the mean grain weight by 1000. The analysis was performed for three biological replicates. The root phenotype was analyzed in the T2 seedlings of homozygous mutant lines and control plants, with seven to 10 biological replicates. Prior to germination, the seeds were placed on wet filter paper in Petri dishes and incubated at 4 ºC for three days for stratification. Then, the seedlings were grown in jars filled with glass beads and Hoagland medium [37 ]. After 10 days of cultivation, the root system of each seedling was scanned with an Epson V750 Pro scanner at 1200 dpi resolution. The total root length; root surface, volume, and diameter; and number of root hairs were analyzed using WinRHIZO software (Regent Instruments, Inc., Quebec, Canada). After scanning, the roots were dried on Whatman 3-MM paper and weighed. Then, the roots were immediately frozen in liquid nitrogen and subjected to further analyses.
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7

Imaging Microbial Colony Growth

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Colony growth was observed daily. Images were captured using a M205FA (Leica, UK) stereo microscope at various magnifications using Leica application suite v 3.8.0. A V750 Pro Scanner (Epson, UK) was used for imaging gross plate layout.
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8

Ultrastructural Imaging of Brain Capillaries

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Tissue samples from each brain region were cut into 1 mm × 1 mm blocks and post fixed in an aqueous solution of 1% osmium tetroxide and 1% lanthanum nitrate for 1 h. The samples were contrast stained en-block with 1% Uranyl acetate for 1 h followed by sequential dehydration in ethanol and propylene oxide. Samples were then embedded in Epon 812 acrylic resin and ultrathin sections of tissue were placed on copper grids for imaging with a JEOL 100CXII electron microscope. Capillaries within the tissue were imaged at a 10,000× magnification. Only capillaries which entirely fit within the image were selected for analysis. Five images per region were captured by a microscopist blinded to the nature of the samples. Film containing the images was developed and digitized using an EPSON V750 pro scanner.
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9

Quantifying Succinate Dehydrogenase Activity

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Succinate dehydrogenase activity was performed on cell membrane microarrays from a human tissue collection (heart, liver, jejunum, duodenum, renal medulla, renal cortex, adrenal gland, adipose tissue, spleen, and lung). CMMAs were incubated in the presence of 1 mM succinate, 0.05 mg/mL NBT, and 50 µM dUQ in phosphate buffer (5 mM; pH 7.4) for 16 h at 25 °C. The reaction was started by the addition of the reagents to the CMMAs. After the incubation time, the reaction was stopped by a dipping in dH2O. Once dried, the CMMA color signal was acquired with an Epson V750 pro scanner, and digital images were analyzed with the software Adobe Photoshop CS5 (Adobe Systems Incorporated, Mountain View, CA, USA) and quantified using software ImageScanner (IMG Pharma S.L, Derio, Spain).
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10

Quantifying Colony Formation via Crystal Violet Staining

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A total of 100 cells per well in sextuplicate were plated on a 24-well plate (Corning). After 1 week of culturing, the cells were fixed with 4% paraformaldehyde for 10 min at room temperature. After washing with PBS, the cells were stained with 0.1% (w/v) crystal violet solution for 30 min at room temperature and rinsed with water until colourless. The plate was dried and scanned with a V750 Pro scanner (Epson, Suwa, Japan). Total number of colonies was analysed with Fiji67 (link).
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