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56 protocols using dpx mounting media

1

Alkaline Phosphatase Staining of Palatal Shelves

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ALPI staining in the palatal shelves in vivo was carried out as previously described (Baek et al., 2011 (link)). Embryonic mouse heads were fixed overnight in freshly prepared 4% paraformaldehyde at 4°C and rehydrated in 30% sucrose at 4°C. Frozen coronal sections (10 μm) were prepared on slides coated with 0.5% gelatin. The sections were air dried for at least 2 h and then rehydrated with TBS with 0.08% tween-20 two times for 10 min each. Subsequently, the sections were treated with alkaline phosphatase buffer (100 mM NaCl, 100 mM Tris-HCl pH 9.5, 50 mM MgCl2, 0.1% Tween-20) for 20 min and stained with alkaline phosphatase buffer containing 4.5 μl/ml of 5-bromo-4-chloro-3-indolyl phosphate (Roche) and 3.5 μl/ml of nitro blue tetrazolium (Roche) for 10 min. The reaction was stopped with PBS containing 20 mM EDTA buffer and counter stained with nuclear fast red. The stained sections were dehydrated in a series of PBS/ethanol, ethanol/xylene and finally mounted in DPX mounting media (Sigma). For osteoblast differentiation in primary MEPM cells, ALPI staining was carried out following the aforementioned protocol after fixing the cells with 4% paraformaldehyde for 15 min.
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2

Cresyl Violet Staining of Brain Tissue

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Brain sections stored in antifreeze solution were mounted on Superfrost Plus slides (Fisher Scientific) and dried at room temperature for 30 min. The slide was pretreated with Xylene (Fisher Scientific, #X5–500), rehydrated through 95 and 70% ethanol to distilled water, and stained in prewarmed 0.1% cresyl violet acetate solution for 15 min. Any excess solution was rinsed quickly with distilled water and sections were dehydrated through 70 and 95% ethanol till 100% ethanol and left in Xylene before being coverslipped with DPX mounting media (Sigma-Aldrich, #06522).
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3

Fluorescent Neuron Staining Protocol

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The 10 µm-thick brain slides were immersed in 1% sodium hydroxide solution for 5 min, then transferred into 70% ethanol for 2 min and rinsed with distilled water for 2 min. After incubation in 0.06% potassium permanganate solution for 10 min, sections were stained with 0.0001% solution of Fluoro-Jade C (Millipore) for 10 min followed by dehydration in a slide incubator at 50 ℃ for 5 min and xylene for 1 min. Then, a coverslip with DPX mounting media (Sigma-Aldrich) was placed. The counting of Fluoro-Jade C+ cells was the same as that in the Immunofluorescence staining section.
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4

Immunohistochemical Detection of c-Fos

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Free-floating sections were rinsed in PBS with 0.1% IgG-free bovine serum albumin (Jackson ImmunoResearch, West Grove, PA, USA) wash buffer and then incubated in a polyclonal antibody to c-Fos primary (1:10,000, Santa Cruz Biotechnology, Santa Cruz, CA, USA, Cat# sc-52) in wash buffer with 0.3% Triton-X100 (Sigma-Aldrich) at room temperature for 48 h at 4°C. After rinsing in wash buffer, sections were incubated for 60 min at room temperature in biotinylated anti-rabbit IgG secondary antibody (1:600; Vectastain Elite ABC kit; Vector Laboratories, Burlingame, CA, USA), rinsed in wash buffer, and then incubated in an avidin-biotin horseradish peroxidase complex (1:200, Vectastain Elite ABC kit) for 60 min at room temperature. The sections were then rinsed in wash buffer and reacted in a 0.1 M Tris buffer (pH = 7.6) with 0.56 mM 3,3′-diaminobenzidine tetrahydrochloride (DAB, Sigma-Aldrich) solution, 0.003% hydrogen peroxide and 63 mM nickel ammonium sulfate (Sigma-Aldrich). After 5 min, sections were rinsed in Tris buffer to stop the chromagen reaction. Immunostained sections were mounted onto glass slides (Adhesion Superfrost Plus Microscope Slides, Brain Research Laboratories, Newton, MA, USA), cover slipped with DPX mounting media (Sigma-Aldrich), and imaged using bright field microscopy.
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5

Immunohistochemistry and H&E Staining Protocol

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Samples for immunohistochemical analysis and hematoxylin and eosin (H&E)
staining were fixed in a solution of 1% paraformaldehyde and Gurr®.
After overnight fixation at room temperature, they were stored in 70%
ethanol. When required, they were processed using a Shandon Citadel 2000 tissue
processor (Thermo Scientific) and embedded in paraffin wax in a Shandon
HistoCentre 3 embedding center (Thermo Scientific). Sections
(5 µM) were cut using a Shandon Finesse 325 microtome (Thermo
Scientific). The DakoCytomation EnVision® Dual Link System-HRP (DAB+)
kit (Dako Ltd, High Wycombe, UK) was used to carry out immunohistochemical
analysis of 5-µM sections according to manufacturer’s instructions.
Sections were stained using antibodies against β-Gal (Promega z3781) or
HO-1 (AbCam, ab13243) at a dilution of 1:100, and counterstained with
hematoxylin.
For H&E staining, 5-µM liver sections were deparaffinized in xylene,
rehydrated in decreasing alcohol concentrations, stained with H&E,
dehydrated in increasing alcohol concentrations, and mounted using DPX mounting
media (Sigma), all according to standard procedures. The sections were
photographed under bright field conditions on a Zeiss Axiocam microscope; the
resulting images were processed with AxioVision software (Zeiss).
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6

Immunoperoxidase Labeling of Opioid Receptors

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Previously described immunoperoxidase labeling methods were used [21 (link)]. The tissue sections were incubated in 1% sodium borohydride in PB for 30 mins to reduce reactive aldehydes. Sections were rinsed in PB until gaseous NaBH4 bubbles disappeared, washed in tris-buffered saline (TS; pH 7.6), and blocked in 0.5% bovine serum albumin (BSA) in TS for 30 mins. The tissues then were incubated with 0.1% BSA and either rabbit anti-pMOR (1:800) or rabbit anti-pDOR (1:500) for 24 hours at room temperature and 48 hours at 4°C. The sections were incubated in donkey-anti-rabbit antibody (1:400; Jackson Immunoresearch Laboratories, Cat# 711-506-152, RRID:AB_2616595) for 30 minutes in 0.1% BSA in TS. The tissue sections incubated in avidin-biotin complex (ABC; Vectastain elite kit, Vector Laboratories, Burlingame, CA) in TS for 30 mins. All incubations had TS washes in between them and were carried out on a shaker at 145 rpm. The sections were placed in 3,3’-diaminobenzidine (Sigma-Aldrich, St. Louis, MO) and 3% H2O2 in TS for 3 mins (pMOR) or 7-9 mins (pDOR). Sections were mounted onto gelatin-coated slides, dehydrated, and cover slipped in DPX mounting media (Sigma-Aldrich).
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7

Mass Spectrometry-Based Tissue Imaging

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The isoflurane anaesthetic and nitrogen 4.0 were obtained from Baxter and Linde (both Bratislava, Slovak Republic), respectively. The indium-tin oxide (ITO) glass slides and α-cyano-4-hydroxycinnamic acid (CHCA) were obtained from Bruker Daltonics (Bremen, Germany). Acetonitrile, methanol, ethanol and water (all LC-MS grade) were obtained from Merck Millipore (Prague, Czech Republic). Trifluoroacetic acid (TFA), chloroform, sodium chloride, 9-aminoacridine (9-AA), haematoxylin solution, Gill no. 2 and DPX mounting media were obtained from Sigma-Aldrich (Prague, Czech Republic). Eosin Y (0.5%) aqueous solution was purchased from VWR Chemicals (Stribrna Skalice, Czech Republic). Hydrochloric and nitric acid (65%, Analpure) were obtained from FlukaBioChemika or Analytika Ltd., respectively (both Prague, Czech Republic). Deionized water (18.2 MΩ/cm) was prepared using a Milli-Q system (Millipore, Molsheim, France). Omni Slides with hydrophobic surfaces were purchased from Prosolia, Inc. (Zionsville, USA).
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8

Fluoro-Jade C Staining for Neurodegeneration

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Brain sections were mounted onto 3 % gelatin coated slides and then processed with the Fluoro-jade C Staining Kit with DAPI counterstain, to label nuclei (Histo-Chem Inc., Product # FJC-SK-DAPI). Slides were immersed in 9 mL 70 % ethanol to 1 mL Solution A (sodium hydroxide) for 5 min. Slides were then placed into 10 mL of 70 % ethanol for 2 min before being transferred to 10 mL of distilled water for an additional 2 min. 9 mL of distilled water were added to 1 mL of Solution B (potassium permanganate) and the slides were left in this solution for approximately 6 min. The slides were removed from this solution and rinsed in 10 mL of distilled water for 2 min. 9 mL of distilled water were added to 1 mL Solution C (Fluoro-jade C) and 1 mL Solution D (DAPI) and slides were placed into this solution for 10 min. Immediately after, slides were transferred and underwent 3 rinses in 10 mL of distilled water for 1 min each. Following rinsing, slides were allowed to dry on a slide warmer after which they were placed in xylene for 1–5 min for clearing. Slides were coverslipped with DPX mounting media (Sigma-Aldrich, 06522–100ML) and #1.5 coverslips (Fisher Scientific).
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9

Immunohistochemical Analysis of DOR-ir in Hippocampal CA1

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To examine changes in the density of DOR-ir in the hippocampal CA1 region, sections were processed using previously described methods (Milner et al., 2011 ). Briefly, tissue sections were rinsed in 0.1 M Tris-buffered Sal (TS; pH = 7.6) and blocked in 0.5% BSA in TS for 30 min prior to incubation in rabbit anti-DOR antibody (1:5000) in 0.1% BSA and TS for 24 h at room temperature (25 °C) followed by an additional 24 h incubation at 4 °C. Sections then were incubated in a 1:400 dilution of donkey-anti-rabbit IgG (Jackson Immunoresearch Laboratories, Cat# 711-506-152, RRID:AB_2616595) for 30 min and rinsed in TS. Next, sections were incubated in avidin-biotin complex (ABC; Vectastain elite kit, Vector Laboratories, Burlingame, CA) at half the manufacturer's recommended dilution for 30 min, washed in TS, and reacted in 3,3′-diaminobenzidine (DAB; Sigma-Aldrich, St. Louis, MO) in 3% H2O2 in TS for 3.5 min. Tissue sections then were rinsed in PB and mounted from 0.05 M PB onto 1% gelatin-coated glass slides. The slides were dehydrated through an ascending series of ethanol concentrations and coverslipped from xylene using DPX mounting media (Sigma-Aldrich).
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10

TUNEL Assay for Cell Death Analysis

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Cell death was examined by terminal deoxynucleotidyltransferase biotin dUTP nick end labeling (TUNEL) assay (Roche, Mannheim, Germany), which contain an anti-dUTP antibody labeled with peroxidase (POD), according to manufacturer’s instructions. Slides were counterstained with methyl green to visualize total nuclei and then mounted with DPX Mounting Media (Sigma Aldrich, St. Louis, MO, United States). Negative controls without enzyme were processed in order to avoid false positive results (data not shown). Images were obtained under a light microscope (Nikon Eclipse TE2000-E, United States).
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