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4 protocols using phospho 4e bp1 s65

1

Comprehensive Western Blot Analysis

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Cells were lysed on ice with CelLytic MT reagent (Sigma) supplemented with protease and phosphatase inhibitors. Primary antibodies: TSC1 (#6935), TSC2 (#4308), phospho-S6 (#4858), S6 (#2217), p21 (#2947), Lamin B1 (#12586), LC3 A/B (#12741), phospho-ATG14-S29 (#92340), ATG14 (#96752), phospho-CREB-S133 (#9198), CREB (#9197), phospho-CHK1-S345 (#2348), phospho-WEE1-S642 (#4910), WEE1(#13084), PLK1 (#4513), γH2A.X (#9718), phospho-S6K-S371 (#9208), S6K (#2708), phospho-4EBP1-S65 (#9451), 4EBP1 (#9644), phospho-AKT-S473 (#4060), AKT (#4691), p53 (#2527), phospho-CDC2-T15 (#9111), CDC2 (#9116), and phospho-ATR-S428 (#2853) from Cell signaling (all used at a 1: 1000 dilution); β-tubulin (#10094-1-ap, 1: 4000), β-actin (#20536-1-ap, 1: 4000), and GAPDH (#10494-1-ap, 1: 10000) from ProteinTech; ATR (#A300-137A-T, 1: 1000) from Bethyl Lab, and CHK1 (#sc-8408, 1:1000) and Cyclin B1(#sc-245, 1: 1000) from Santa Cruz.
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2

eIF4E and 4E-BP1 Expression Plasmids

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HA-tagged and FLAG-tagged eIF4E expression plasmids were constructed by cloning eIF4E to AfeI and SbfI sites on the pLVX-EF-puro plasmid (53 (link)). pLVX-EF-4E-BP1WT and pLVX-EF-4E-BP1S83A expression plasmids were generated based on previous constructs (34 (link)). Doxycycline-inducible 4E-BP1T37A and 4E-BP1T46A plasmids were constructed by cloning corresponding 4E-BP1 mutant fragments to AfeI and SbfI sites on the pLenti-TRE-MCS-EF-Puro-2A-rTet plasmid (54 (link)). DNA constructs used in this study are listed in Table S1.
The following primary antibodies were used in this study: total 4E-BP1 (53H11, Cell Signaling Technology), phospho-4E-BP1T37/T46 (236B4, Cell Signaling Technology), phospho-4E-BP1T70 (9455, Cell Signaling Technology), phospho-4E-BP1S65 (9451, Cell Signaling Technology), phospho-4E-BP1S83 (ABE2889, Millipore), eIF4E (C46H6, Cell Signaling Technology), eIF4GI (D6A6, Cell Signaling Technology), eIF4E (A-10, Santa Cruz Biotechnology), eEF2 (2332, Cell Signaling Technology), HA tag (16B12, BioLegend), and FLAG tag (M2, Sigma-Aldrich).
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3

Western Blot Analysis of Cellular Proteins

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Cells were lysed in cell lysis buffer (20 mM Tris, pH 7.5, 135 mM NaCl, 5% [v/v] glycerol, 50 mM NaF, 0.1% [v/v] Triton X-100, plus protease inhibitors), centrifuged and protein quantified using Bradford reagent (Sigma-Aldrich). Samples were made up in NuPAGE LDS sample buffer (Life Technologies). Western blotting was performed as previously described [28 (link)]. Blots shown are representative of 3 independent experiments. Anti-β-actin (#4967), phospho-TSC2 S1387 (#5584), total TSC2 (#3990), IRE1α (3294S), phospho-S6K1 T389 (#9205), total S6K1 (#9202), phospho-rpS6 S235/236 (#2211), total rpS6 (#2217), phospho-4E-BP1 S65 (#9451), total 4E-BP1 (#9644), phospho-ACC S79 (#3661), total ACC (#3676), PARP (#9542), caspase 3 (#9662), ATF4 (#11815), phospho-FOXO3a (#9466S), total FOXO3a (#9467), phospho-PRAS40 T246 (#2997), total PRAS40 (#2691) and phospho-Bad S136 (#4366) antibodies were from Cell Signaling Technology (Danvers, MA, USA). GADD34 antibody (10449-1-AP) was from Proteintech (Manchester, UK).
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4

Immunoblotting Analysis of Lysosomal and Cellular Signaling

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Immunoblotting was performed on whole-cell lysates, lysosomal extracts as previously described (11 (link)). Cell Signaling Technology antibodies: Rheb (#13879), β-actin (#3700), 4E-BP1 (#9644), phospho-4E-BP1 S65 (#13443), S6K (#2708), phospho-S6K T389 (#9206), S6 (#2317), phospho-S6 S240_S244 (#5364), p18 (#8975), RagA (#4357), RagC (#3360), mTOR (#2983), ATG5 (#2630), Cathepsin D (#2284), Caspase-7 (#12827) and phospho-H2AX (#9718). Galectin-3. LAMP2 was purchased from Santa Cruz. LC3B antibody was generated as described previously (48 ). Lysosomal and extra-lysosomal fractions were purified according to the manufacturer’s instructions (Sigma #LYSISO1).
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