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Cary eclipse fluorometer

Manufactured by Agilent Technologies
Sourced in United States, Germany

The Cary Eclipse fluorometer is a highly sensitive and versatile instrument used for fluorescence measurements. It is designed to detect and quantify the fluorescence properties of various samples, including solutions, solid materials, and thin films. The Cary Eclipse fluorometer provides accurate and reliable fluorescence data to support a wide range of applications in fields such as chemistry, biology, and materials science.

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40 protocols using cary eclipse fluorometer

1

Spectroscopy and Imaging Methodology

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Example 14

All measurements were taken at ambient temperature (23±2° C.). Fluorescent molecules were prepared as stock solutions in DMSO and diluted such that the DMSO concentration did not exceed 1% v/v. Spectroscopy was performed using 1-cm path length quartz cuvettes (Starna). Absorption measurements were recorded on a Cary Model 100 spectrometer (Varian). Fluorescence measurements spectra were recorded on a Cary Eclipse fluorometer (Varian). Images were processed in ImageJ/Fiji. Data was analyzed and graphs were plotted using Prism (GraphPad). Movie renderings were done using Imaris (Bitplane)

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2

Nanoparticle-Mediated PrP^C Binding Assay

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Increasing concentrations of sonicated nanoparticles diluted in PBS (up to 80 µg ml−1) were incubated with recombinant PrPC (2 µM) in PBS (100 µl) for 2 h at 4 °C under gentle agitation. Solutions were then centrifuged at 13,523 g for 30 min at 4 °C to pellet nanoparticles and bound PrPC. Fluorescence corresponding to free PrPC was measured in the supernatant (λexc = 280 nm, slit width = 5 nm; λem = 340 nm, slit width = 10 nm) using a Cary Eclipse fluorometer (Varian Inc., Agilent Technology). Free PrPC was also quantified by Western-blotting.
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3

Measurement of Cellular Glutathione Levels

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The level of GSH was determined using the GSH sensitive probe Celltracker Green CMFDA (Molecular Probes, Eugene, OR, USA). 1C11 and 1C115−HT cells were exposed to TiO2 or CB nanoparticles (1 µg cm−2) up to 24 h. The cells were then washed twice with Hanks’ balanced salt solution (HBSS) buffer (Invitrogen, ThermoFisher Scientific, MA, USA) and further incubated for 30 min at 37 °C in HBSS in the presence of 1 µM fluorogenic reagent. HBSS was removed, and the cells were left to reconstitute in DMEM, 10% FCS for 30 min at 37 °C before lysis. Fluorescence intensity of cell lysates was recorded at λem = 517 nm (slit width = 5 nm) after excitation at λexc = 492 nm (slit width = 5 nm) using a Cary Eclipse fluorometer (Varian Inc., Agilent Technology). The reference level of intracellular reduced GSH (100%) was obtained using cells unexposed to nanoparticles.
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4

Extraction and Fluorescence Analysis of H. pylori Compounds

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Bacterial extracts from H. pylori cultures (100 ml) were prepared as previously described (Battisti et al., 2017a (link), b (link)). H. pylori cells were harvested by centrifugation (7000 × g at 4°C for 10 min), washed in 20 ml pre-chilled buffer (0.05 M Tris pH 8.2–2 mM EDTA) and suspended in 10 ml of the same buffer. An aliquot (1.5 ml) of a mixture of ethyl acetate and acetic acid (3:1, v/v) was added and bacterial cells were lysed by sonication in ice. Then, the organic phase was extracted with 100 μl of HCl 3 M. After vigorous vortexing, this solution was centrifuged (7000 × g for 5 min) and then the bottom layer was collected for spectroscopic analysis and diluted in HCl 3M/MeOH 1:3. Fluorescence measurements were carried out with a Cary Eclipse fluorometer (Varian, Palo Alto, CA, United States) using 5 nm excitation band-pass, 5 nm emission band-pass, 0.5 s integration time.
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5

Time-dependent Fluorescence Measurements

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The time-dependent fluorescence changes
were followed at 33 °C on a Cary Eclipse Fluorometer (Varian
Inc.). The excitations of Cy3, Cy5, FAM, and TAMRA were performed
at 540, 540, 496, and 496 nm, respectively. The emissions of Cy3 Cy5,
FAM, and TAMRA were recorded at 560, 660, 516, and 583 nm, respectively.
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6

Characterization of Iodine-Doped Carbon Dots

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The chemical structures of I-doped CDs were analyzed using a Fourier transform infrared (FTIR) spectrometer (Nicolet Nexus 470, GMI, Ramsey, MN, USA). The elemental composition was determined by elemental analysis performed on a CHNS-O analyzer. The morphologies of the I-doped CDs were examined by high-resolution transmission electron microscopy on a JEM-2100 microscope (JEOL, Tokyo, Japan) under an accelerating voltage of 200 kV. UV–Vis (ultraviolet–visible) absorption spectra were recorded using a UV-2450 UV–Vis Spectrophotometer (Shimadzu, Kyoto, Japan). PL emission measurements were made using a Cary Eclipse Fluorometer (Varian, Palo Alto, CA, USA). The iodine element of I-doped CDs was quantified by linear calibration with a standard content of previously determined amounts of potassium iodine by inductively-coupled plasma atomic emission spectroscopy.
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7

Fluorescent Measurement of CheA-ATP Binding

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The binding of ATP analogue
TNP-ATP to CheA enhanced the fluorescence at 541 nm when the nucleotide
was excited at 410 nm. The dissociation constants between CheA variants
and the ATP analogue were measured at 25 °C on a Varian Cary
Eclipse fluorometer as previously reported by Stewart et al.45 (link) The buffer used in the measurements contained
50 mM Tris-HCl (pH 7.5), 100 mM KCl, and 10 mM MgCl2.
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8

Spectroscopic Characterization of Biomolecules

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Spectroscopy was performed using 1-cm path length, 3.5-mL quartz cuvettes from Starna Cells or 1-cm path length, 1.0-mL quartz microcuvettes from Hellma. All measurements were taken at ambient temperature (22 ± 2 °C) in 10 mM HEPES, pH 7.3 buffer unless otherwise noted. Absorption spectra were recorded on a Cary Model 100 spectrometer (Varian); reported values for extinction coefficients (ε) are averages (n = 3). Fluorescence spectra were recorded on a Cary Eclipse fluorometer (Varian). Normalized spectra are shown for clarity.
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9

Comprehensive Characterization of MNI-PDT

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Surface characteristics of MNI-PDT were determined using X-ray photoelectron spectroscopy (XPS) by means of the K-alpha instrument (Thermo-Fisher, Waltham, MA, USA). The morphological properties of MNI-PDT were analyzed by Field emission scanning electron microscopy (FESEM) using the MIRA II KMH-TESCAN instrument. Energy-dispersive X-ray spectroscopy (EDS, X-act6, OXFORD) analysis was performed to determine elemental composition. The phase analysis to understand the level pureness of the sample was considered by XRD with Bragg’s diffraction 2θ (10 to 50°) with a 2°/minute scan rate by X-ray diffraction (Rigaku-D/MAX2500V/PC, Cedar Park, TX, USA). The absorption parameters were measured with the aid of a UV-VIS spectrophotometer (JASCO V-770, Oklahoma City, OK, USA). The photoluminescence characteristics were determined by a Cary Eclipse fluorometer (Varian, Palo Alto, CA, USA). Functional groups present in composite were studied by Fourier transmission Infrared spectroscopy (FTIR) by Bruker Optik GmbH, Ettlingen, Germany (FTIR, Vertex-70V/Hyperion 3000).
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10

Characterization of HA-Bi2O3 Nanoparticles

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The chemical structures of HA-Bi2O3 NPs were analyzed using a Fourier transform infrared (FT-IR) spectrometer (Nicolet Nexus 470; GMI, Franklin, IN, USA). The elemental composition was determined by elemental analysis performed using X-ray photoelectron spectroscopy (XPS). The resultant particle sizes were analyzed by a NanoDLS particle size analyzer (Brookhaven Instruments Corporation, Holtsville, NY, USA). The morphologies of the HA-Bi2O3 NPs were examined by high-resolution transmission electron microscopy (HRTEM) on a JEM-2100 microscope (JEOL, Tokyo, Japan) under an accelerating voltage of 200 kV. Ultraviolet–visible (UV–Vis) absorption spectra were recorded using a UV-2450 UV–Vis spectrophotometer (Shimadzu, Kyoto, Japan). Photoluminescence emission measurement was made using a Cary Eclipse Fluorometer (Varian, Palo Alto, CA, USA). The bismuth element of HA-Bi2O3 NPs was quantified by linear calibration using amounts of potassium iodine previously determined by inductively coupled plasma mass spectroscopy (ICP-MS).
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