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5 protocols using anti t7 antibody

1

Proteasome-mediated Sic1 Degradation Assay

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Purified human proteasomes (~30 nM) were incubated with RPN13 (~300 nM), Ubn–Sic1PY (~300 nM) in degradation buffer (50 mM Tris-HCl (pH 7.5), 5 mM MgCl2 and 5 mM ATP) at 37 °C. Purified recombinant USP14 variants (~1.2 μM) were incubated with proteasome for 20 min at room temperature before initiating the degradation reaction. The reaction mixtures were incubated at 37 °C for 0, 0.5, 1.0 and 2.0 min, or 10 °C for 0, 0.5, 1.0, 5.0, 10 and 30 min, then terminated by adding SDS loading buffer and subsequently analysed by western blot using anti-T7 antibody (Abcam, 1:1,000 dilution), which was used to examine fusion protein T7–Sic1PY.
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2

Antibody-based Detection of SecA Dimer

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Rabbit anti-uL23 antibody was customized from GenScript using CGKVKRHGQRIGRRS as the epitope. Anti-T7 antibody was purchased from Abcam. Anti-strep, anti-HA and anti-SUMO antibody were purchased from GenScript. Primary antibodies were incubated with IRDye® 800CW secondary antibodies (LI-COR) for detection. Protein band intensity was quantified by the Odyssey® CLx imaging system. The additional bands in the anti-T7 blots are potentially SecA dimer induced by cysteine-cysteine crosslinking, because: (i) their apparent size (slightly above 200kDa) is consistent with a SecA dimer (204kDa); (ii) their appearance depends on the presence of the crosslinker; (iii) their intensity depends on the position of engineered cysteine on SecA (Fig. 1a and new Supplementary Fig. 1g), with the strongest band at residue 797 (Fig. 1a) near a reported SecA dimer interface48 .
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3

Elucidating Inflammatory Signaling Pathways

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Erlotinib was purchased from MedChem Express. Cetuximab was from MERCK Serono. Trametinib and vemurafenib were from ApexBio. Selumetinib and MG132 were from Selleckchem. Recombinant human IL-36γ (catalog 6835), mouse IL-36γ (catalog 6996), and human IL-36Ra (catalog 1275) were from R&D Systems. Pam3CSK4 was from InvivoGen. The goat anti–IL-36γ (catalog AF2320) and anti-mouse KLF4 (catalog AF3158) antibodies were from R&D Systems. The rabbit anti–IL-36γ (catalog LS‑C201142) and its blocking peptide (catalog LS-E45854) were from LifeSpan BioSciences. The anti–human KLF4 antibody (catalog AM09057PU-N) was from Acris. The anti–β-actin (catalog A5441), anti-FLAG (catalog F1804), and anti-myc (catalog C3956) antibodies were from Sigma-Aldrich. The anti–human KLF4 (catalog 12173), anti-ERK (catalog 9107), anti–phospho-ERK (catalog 4370), and anti–phospho-threonine/proline (catalog 9391) antibodies were from Cell Signaling Technology. The anti-T7 antibody was from Abcam (catalog ab9138). The anti-HA antibody was from Santa Cruz Biotechnology (catalog sc-805). The secondary antibodies used were alkaline phosphatase–conjugated mouse IgG (catalog S372B), rabbit IgG (catalog S373B), and goat IgG (V115A) from Promega. Live C. acnes was prepared as previously described (63 (link)).
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4

In Vitro and In Vivo SUMOylation Assays for ROS1

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The in vitro SUMOylation assay was performed as described previously (Okada et al., 2009) . The pET28a_ ROS1c/ROS1d-expressing N-terminal T7-tagged variant ROS1 (ROS1c: 1-290 aa; ROS1d: 794-1063 aa) and pGEX4T1_ROS1c/ROS1d-expressing GST-ROS1c/ ROS1d-Myc were generated. The SUMOylation was analyzed by western blotting using anti-T7 antibody (Abcam) or anti-Myc antibody (Millipore).
The in vivo SUMOylation assay was conducted as described (Zheng et al., 2012) . The coding sequences of ROS1 or SUMO1 were cloned into pUC18-Flag or pUC18-HA, respectively, and co-expressed in Col-0 or siz1-2 protoplasts. The protoplasts were collected after 20 h of incubation at 22 C. The proteins were immunoprecipitated by anti-Flag mAb-Magnetic beads (MBL International) detected by western blotting using anti-HA antibody (Roche) and anti-Flag antibody (Sigma).
For LC-MS/MS analysis, the anti-Flag mAb-Magnetic bead-immunoprecipitated proteins were separated in SDS-PAGE gel followed by silver staining using Fast Silver Stain Kit (Beyotime). The bands of ROS1 and SUMOylated ROS1 were cut into pieces according to their molecular weights and used for LC-MS/MS analysis at BGI.
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5

Antibody-based Detection of SecA Dimer

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Rabbit anti-uL23 antibody was customized from GenScript using CGKVKRHGQRIGRRS as the epitope. Anti-T7 antibody was purchased from Abcam. Anti-strep, anti-HA and anti-SUMO antibody were purchased from GenScript. Primary antibodies were incubated with IRDye® 800CW secondary antibodies (LI-COR) for detection. Protein band intensity was quantified by the Odyssey® CLx imaging system. The additional bands in the anti-T7 blots are potentially SecA dimer induced by cysteine-cysteine crosslinking, because: (i) their apparent size (slightly above 200kDa) is consistent with a SecA dimer (204kDa); (ii) their appearance depends on the presence of the crosslinker; (iii) their intensity depends on the position of engineered cysteine on SecA (Fig. 1a and new Supplementary Fig. 1g), with the strongest band at residue 797 (Fig. 1a) near a reported SecA dimer interface48 .
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