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Nb400 135

Manufactured by Novus Biologicals
Sourced in United States

The NB400-135 is a laboratory centrifuge designed for separating components in liquid samples. It features a maximum speed of 4,000 rpm and can accommodate a variety of sample volumes. The centrifuge is equipped with a rotor system and a digital display for monitoring speed and time. The device is suitable for various laboratory applications requiring sample separation.

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8 protocols using nb400 135

1

Immunofluorescence Staining of RetSat and ChREBP

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Cells were fixed with 4% paraformaldehyde on ice for 20 min, washed with PBS and permeabilized with 0.5% Triton X-100 at room temperature (RT) for 15 min. To block non-specific staining, cells were washed and incubated for 1 h at RT in PBS containing 3% BSA and 0.02% Tween and immunolabeled overnight at 4 °C with primary antibodies: RetSat5 (link) (diluted 1:300 in 3% BSA with 0.02% Tween20), ChREBP (NB400-135, Novus Biologicals, lot M1, diluted 1:300 in 3% BSA with 0.02% Tween20). Cells were washed and incubated with fluorochrome-conjugated secondary antibody (Alexa Fluor® 555 (Life Technologies, diluted 1:600 in 3% BSA) for 1 h at RT. Cells were washed and nuclei were stained with DAPI (Life Technologies) and mounted in Mowiol. Cells were imaged using a confocal microscope (Leica DM 2500). Background subtraction was performed and intensities were quantified by ImageJ software.
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2

Analyzing Liver Tissue Signaling Pathways

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Liver tissues were homogenized in ice-cold radioimmunoprecipitation assay buffer (Pierce) containing 1× PhosSTOP (Sigma) and Protease Inhibitor Cocktail Set III (Calbiochem). Blots were incubated overnight at 4°C with the following primary antibodies: Ad36E4ORF1 (1:1,000; a gift from N.V.D.), GAPDH (1:500, CB1001; Calbiochem), actin (1:3,000, #4970; Cell Signaling), total Ras (1:1,000, #3965; Cell Signaling), c-Myc (1:1,000, #5605; Cell Signaling), phospho-AKT(Ser473) (1:1,000, #9271; Cell Signaling), phospho-AKT (Thr308) (1:1,000, #9275; Cell Signaling), total AKT (1:1,000, #9272; Cell Signaling), insulin receptor β-subunit (1:1,000, 05-1104; Millipore), phospho-insulin receptor (Tyr1322) (1:200, 04-300; Millipore), IRS-2 (1:1,000, #4502; Cell Signaling), phospho-IRS-1/2 (Tyr612) (1:500, sc-17195; Santa Cruz Biotechnology), mature-form SREBP1 (1:1,000, NB100-60545; Novus Biologicals), carbohydrate responsive element–binding protein (ChREBP) (1:1,000, NB400-135, Novus Biologicals), phospho-FoxO1 (Ser256) (1:1,000, #9461; Cell Signaling), FoxO1 (1:1,000, #2880; Cell Signaling), and rictor (1:1,000, #2140; Cell Signaling).
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3

Topical Raffinose Treatment in Hairless Mice

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Adult hairless mice (Skh:HR-1) 8 weeks of age (SLC Japan, Tokyo, Japan) were treated topically twice a day for 4 days with 1 and 5% raffinose dissolved in a mixture of PEG 400 and PEG 3350 at a weight ratio of 3:2 (0.1 ml applied to 2-cm2 area). Control hairless mice were treated with vehicle alone (n = 6). At the end of treatment, the dorsal skin was collected and the epidermis was isolated. Skin samples were fixed overnight in 4% formaldehyde and embedded in paraffin. For histological examination, a 5-μm section of Paraplast-embedded tissue was stained routinely with hematoxylin and eosin (H&E). Immunohistochemistry was examined with antibodies against involucrin (924401, BioLegend, San Diego, CA), filaggrin (sc-66192, Santa Cruz biotechnology), SCD1 (sc-14719, Santa Cruz biotechnology), ChREBP (NB400-135, Novus Biologicals, Littleton, CO), AQP3 (ab125219, Abcam), LXR (PP-PPZ0412-10, Perseus Proteomics), and PCNA (ab18197, Abcam). The experimental protocols were approved by the Seoul National university Institutional Animal Care and Use Committee (permission number SNU-150818-6) and all experiments were conducted according to the committee’s guidelines.
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4

Investigating Protein Homeostasis Regulators

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Livers were homogenized and lysed in a solution containing 20 mM Tris (pH 7.5) 150 mM NaCl, 1 mM EDTA, 1 mM EGTA, 1% Triton X-100, 2.5 mM sodium pyrophosphate, and 1 mM sodium orthovanadate. Subcellular fractions were obtained using Subcellular Protein Fractionation Kit for Tissues (Thermo Fisher Scientific). Immunoprecipitation was performed with each antibody using Capturem IP & Co-IP kit (Takara). Samples were separated by SDS-PAGE using 4 to 12% Bis-Tris gel (Bio-Rad) and transferred to a polyvinylidene difluoride membrane (Bio-Rad). Membranes were immunoblotted with each antibody. Amersham ECL prime (GE Healthcare Life Sciences) and ImageQuant LAS 4000mini (GE Healthcare Life Sciences) were used for the detection and quantification. Antibodies used in the present study are as follows: SREBP1 (ab3259; Abcam), VCP (ab11433; Abcam), S1P (ab140592; Abcam), SREBP2 (ab30682; Abcam), CHOP (2895; Cell Signaling Technology), BiP (3177; Cell Signaling Technology), β-actin (3700; Cell Signaling Technology), RHBDL4 (20869-1-AP; Proteintech), TBP (22006-1-AP; Proteintech), gp78 (16675-1-AP; Proteintech), HRD1 (13473-1-AP; Proteintech), Ubiquitin (10201-2-AP; Proteintech), carbohydrate-responsive element–binding protein (NB400-135; Novus Biologicals), ATF6 (NBP1-40256; Novus Biologicals), and normal mouse IgG (sc-2025; Santa Cruz Biotechnology).
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5

Immunofluorescence analysis of CHREBP and cyclin D1

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AGS and SGC-7901 cells were cultured on a confocal laser dish, which were then washed, fixed, permeabilized. Afterwards it was incubated with anti-CHREBP (1:100, #NB400-135, Novus Biologicals, Germany) and anti-cyclin D1 (1:250, #55506, Cell Signaling Technology, USA) antibodies at 4 °C for 24 h. Samples were then blocked, washed, and incubated with a FITC-conjugated goat anti-rabbit or Cy3-conjugated goat anti-mouse IgG antibody (Thermo Fisher Scientific, Waltham, MA, USA). In addition, DAPI (1:1000, RiboBio, China) was employed to stain cell nuclei for 3 min. TCS SP8 confocal microscope (Leica, Wetzlar, Germany) was utilized to microscopically analyze cells.
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6

Immunohistochemistry Protocol for ChREBP

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Immunohistochemistry was carried out following an established protocol40 (link). Briefly, colon tissue microarray or paraffin tissue sections were dewaxed, rehydrated through graded ethanol and incubated with 3% hydrogen peroxide for 30 min. Antigen retrieval was performed by heating the sections to 95 °C in 0.01 mol/l citrate buffer (pH6.0) for 15 min. Slides were then washed in PBS for 15 min and treated with 10% normal horse serum for 30 min and incubated with primary antibody at 4 °C overnight. The reaction products were detected with the 3-amino-9-ethylcarbozole (AEC) substrate-chromogen kit after incubating with the secondary antibody (Dako REAL EnVision Detection Kit (Dako, Carpinteria, CA)) for 30 min and washing in 0.1 M PBS at room temperature. Staining with AEC resulted in red signals. The primary rabbit-derived polyclonal antibody for anti-ChREBP (Novus biologicals, NB400-135, USA) was used at a 1:200 dilution. For negative controls, primary antibodies were replaced with PBS.
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7

LXR Regulation of Epidermal Barrier Genes

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HaCaT cells were seeded in DMEM with 5% charcoal-stripped FBS, and the medium was changed to DMEM with 1% charcoal-stripped FBS for treatment of the testing materials to avoid any interference caused by steroid-like substances present in FBS. Isolation of total RNA, cDNA synthesis, and qRT-PCR were performed as previously described using specific primers as shown in Table S2. Western blotting was performed using specific antibodies against LXRα and LXRβ (PA1–332, Thermo Scientific, Waltham, MA), filaggrin (sc-66192, Santa Cruz Biotechnology, CA), SCD1 (sc-14719, Santa Cruz Biotechnology), loricrin (sc-51130, Santa Cruz Biotechnology), ABCA1 (ab18180, Abcam, Cambridge, UK), ABCG1 (ab52617, Abcam), involucrin (I9018, Sigma-Aldrich), ChREBP (NB400-135, Novus Biologicals, Littleton, CO), AQP3 (ab125219, Abcam), Actin (sc-1616, Santa Cruz Biotechnology), and α-tubulin (05-829, Millipore, Billerica, MA), as previously described39 (link). ChIP assays were performed using antibodies against LXR (PA1-332, Thermo Scientific), JunD (sc-74, Santa Cruz Biotechnology), Fra1 (sc-28310, Santa Cruz Biotechnology), p300 (sc-585, Santa Cruz Biotechnology), and AcH3K9 (ab4441, Abcam). Immunoprecipitated DNA was amplified by PCR with specific primers as described previously (Table S2)39 (link).
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8

Immunohistochemical Profiling of Liver Glucose Transporters

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Immunohistochemistry was carried out following an established protocol [31 (link)]. Briefly, liver tissue microarray or paraffin tissue sections were dewaxed, rehydrated through graded ethanol and incubated with 3% hydrogen peroxide for 30 min. Antigen retrieval was performed by heating the sections to 95 °C in 0.01 mol/l citrate buffer (pH 6.0) for 15 min. Slides were then washed in PBS for 15 min and treated with 10% normal horse serum for 30 min and incubated with primary antibody at 4 °C overnight. The reaction products were detected with 3-amino-9-ethylcarbozole (AEC) substrate-chromogen kit after incubating with the secondary antibody of Dako REAL EnVision Detection Kit (Dako, Carpinteria, CA) for 30 min and washing in 0.1 M PBS at room temperature. Staining with AEC resulted in red signals. The primary antibody for GLUT2 (Novus Biologicals, NBP2-22218SS, USA), GLUT1 (Abcam, ab115730, USA), were used at a 1:500 dilution and anti-ChREBP (Novus Biologicals, NB400–135, USA) was used at a 1:200 dilution. The antibodies against GLUT2 and ChREBP were rabbit-derived polyclonal and the antibody against GLUT1 was rabbit-derived monoclonal. For negative controls, the primary antibodies were replaced with PBS.
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