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44 protocols using anti rad51

1

Quantifying DNA Damage Response in Cancer

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Laser scanning confocal microscopy was performed to detect RAD51 and γH2AX foci in cancer cells. Briefly, ovarian cancer cell, CP70 were grown on coverslips and treated with 10 µM etoposide or vehicle for 24 h followed by an additional 24 h in drug-free media. Coverslips were washed with PBS and fixed with 4% paraformaldehyde (Electron Microscopy Sciences) in PBS. Cells were permeabilized with 0.01% triton-X 100 (Fisher Scientific) for 5 min followed by a wash with chilled PBS and blocked with 3% goat serum (Thermo Scientific) for 1 h at room temperature. Cells were incubated with anti-RAD51 (1:250, Abcam) or anti-γH2AX (1:300, Cell Signaling Technology) antibodies overnight at 4 °C in a humidified chamber. Next, cover slips were washed 3X with PBS. Alexa fluorescent conjugated secondary antibodies were added to the coverslips and incubated for 1 h. Coverslips were washed 3 × and mounted with DAPI containing Vectashield (Vector Lab). Images were captured by confocal microscope at 63 × magnification in oil emersion (Leica SP8 confocal microscope). RAD51 and γH2AX foci were counted on 100 representative cells by image J software.
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2

Quantifying DNA Damage and Repair

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HR was assessed as previously described [25 (link)]. Cycling cells were seeded at 40,000 cells/cm2 and incubated for 24 h. Cells were exposed to 200 mJ/cm2 of UV-C radiation, incubated for 2 h, and fixed in ice-cold methanol. Cells were permeabilised and treated with 1 µg/ml anti-phosphorylated H2AX (Millipore, 05-636-I) and 1:1000 anti-Rad51 (Abcam, ab133534) antibodies followed by exposure to 2 ug/ml Alexa Fluor 546 and 488 antibodies (Invitrogen, A-11003 and A-11008). Cells were imaged with a Zeiss Axio Observer Z1 and Zen 2.3 software. ImageJ software identified DAPI nuclear regions. A twofold increase in the average number of phosphorylated H2AX foci in irradiated versus control cells demonstrated sufficient cellular assault. Our previously validated threshold of a twofold increase in average Rad51 foci number versus control signalled a competent cell [25 (link)]. Antibodies are provided in Supplementary Information Section 1.2.
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3

Cisplatin-Induced Proteomic Changes in Ovarian Cancer Cells

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Proteins were extracted after cells were exposed to cisplatin (IC50) for 48 h using ice-cold RIPA buffer (Beyotime, Chongqing, China) supplemented with phenylmethanesulfonyl fluoride (PMSF); the concentration was determined with a BCA kit (Beyotime). Proteins were separated by SDS-PAGE and transferred to a PVDF membrane (Merck Millipore, Billerica, MA, United States). Primary antibodies were as follows: anti-NTNG1 (GeneTex), anti-RAD51 (Abcam, Cambridge, United Kingdom), anti-AXL/p-AXL (Cell Signaling Technology, Danvers, MA, United States), anti-Akt/p-Akt (Cell Signaling Technol.), anti-GAS6 (Bioss Biotechnology, Beijing, China), and anti-β-actin (Proteintech, Wuhan, China). The secondary antibody was a goat anti-rabbit IgG antibody (Abcam). Bands were analyzed with the software Image Lab (Bio-Rad Lab., Hercules, CA, United States). The density ratio was used to calibrate the level of a target protein, with β-actin as the reference.
To detect the expression level of NTNG1 after cisplatin exposure, proteins were extracted after SKOV3 or SKOV3/DDP cells were exposed to cisplatin (IC50 or 0.5 × IC50) for 48 h, or after SKOV3/DDP cells were cultured in cisplatin-free medium for 3, 5, 7, and 9 days.
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4

DNA Damage Response Imaging Protocol

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Cells were cultured on coverslips and were treated with 10 μM VP-16 for the indicated times. Cells were then washed with PBS, fixed with 4% paraformaldehyde for 10 min at room temperature, and were subsequently permeabilized in 0.5% Triton X-100 solution for 10 min. After being blocked by 5% BSA, cells were incubated with primary antibodies overnight and subsequently secondary antibodies for 1 h. Coverslips were then mounted using DAPI containing anti-fade. Images were captured using a Leica SP8 Laser confocal optical imaging platform. Images were processed using Leica Application Suite X. The percentage of cells carrying indicated foci was calculated after analyzing three independent experiments. Approximately 150 cells were counted for each sample. Antibodies used for immunofluorescent staining are as follows: anti-gamma-H2AX (Abcam; Mouse; ab22551; 1:100 dilution), anti-Rad51(Abcam; Rabbit; ab133534; 1:400 dilution), anti-Brca1(Santa Cruz Biotechnology; Mouse; sc-6954; 1:100 dilution), and anti-FLAG (Cell Signaling Technology; Rabbit; #14793; 1:200 dilution). The following secondary antibodies were used: Alexa Fluor 488 Goat Anti-Mouse (Life Technologies; A-11008; 1:1000) and Alexa Fluor 594 Goat Anti-Rabbit (Life Technologies; A-11012; 1:1000).
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5

Synergistic Inhibition of EGFR and PARP in Cancer

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The EGFR-TKI icotinib hydrochloride (IH) was kindly provided by Zhejiang Beta Pharma Co., Ltd. The PARPi fluzoparib (FZ) was kindly provided by Jiangsu Hengrui Medicine Co., Ltd. The two inhibitors were dissolved in 100% dimethyl sulfoxide (DMSO) (Solarbio) to 50 mM and stored at −20°C. Cell Counting Kit-8 (CCK-8) reagent was obtained from Dojindo Laboratories (Kumamoto, Japan). An Annexin V-APC/7-AAD apoptosis kit was obtained from Multi Sciences (Shanghai, China). A BCA protein assay kit was obtained from Beyotime. RNAiso Plus Reagent was obtained from Takara (Dalian, China). SYBR® qPCR Master Mix was obtained from Vazyme. Anti-phospho-EGFR (Y1068), anti-EGFR, anti-phospho-AKT (S473), anti-AKT, anti-phospho-MAPK (Y204), anti-MAPK, and anti-PARP1 antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA). Anti-RAD51, anti-γ-H2AX, anti-β-tubulin, and anti-β-actin antibodies were purchased from Abcam (Cambridge, MA, USA).
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6

Antibody Immunostaining Protocol

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The following antibodies were used in this study: an anti-G0S2 (dilution 1:200; Proteintech, IL, USA); an anti-phospho-Histone H2A.X (Ser139) (dilution1:1000; EMD Millipore, Billerica, MA, USA); anti-53BP1 (dilution1:500), anti-RNF168 (dilution1:500), anti-CXCL5 (dilution 1:1000) and anti-Rad51 (dilution 1:1000)(Abcam, Cambridge, MA, USA). The secondary antibodies were from Jackson ImmunoResearch Laboratories (West Grove, PA, USA). Cell culture media and other reagents were from Invitrogen (Carlsbad, CA, USA), Sigma-Aldrich (St. Louis, MO, USA) or Peprotech (Rocky Hill, NJ, USA).
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7

Synergistic Effects of MEK and PARP Inhibition

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The MEK1/2 inhibitor pimasertib and hypoxia-activated prodrug evofosfamide were provided by EMD Serono Research and Development Institute (Billerica, MA) and Threshold Pharmaceuticals (South San Francisco, CA). Both reagents were dissolved in DMSO to make a 10mM stock solution and were stored at −20°C. The PARP inhibitors olaparib and rucaparib were a gift from the University College Hospital MacMillan Cancer Center (London, UK). The following reagents were used: Thiazolyl Blue Tetrazolium Bromide (MTT); for immunoblotting, the following antibodies were used: anti–β-actin and anti-calnexin as loading controls; anti-cleaved-PARP, anti-p-ERK, anti-ERK, anti-γH2AX (Cell Signaling Technology) and secondary antibodies anti-mouse and anti-rabbit IgG HRP linked antibodies (Cell Signaling Technology). For Immunofluorescence analysis, anti-BRCA2 (Santa Cruz Biotechnology), anti-RAD51 (Abcam) and anti-phosphorylated histone-H2AX (Merck Millipore) antibodies were used.
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8

Dexamethasone and DMSO Modulate Autophagy

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Dexamethasone and dimethyl sulfoxide (DMSO) were purchased from Sigma (St. Louis, MO, USA). Chloroquine (CQ, an autophagy inhibitor) and AZD6738 (an ATR inhibitor) were purchased from Selleck Chemicals (Houston, TX, USA). Annexin V Apoptosis Detection Kit APC/PI was obtained from BD Biosciences (NJ, USA). The following primary antibodies were used: anti-HMGB1 (Cell Signaling Technology (CST), #6893), anti-caspase-3 (CST, #6893), anti-Bcl-2 (CST, #6893), anti-Bcl-xl (CST, #6893), anti-PARP (CST, #6893), anti-DEPTOR (CST, #6893), anti-mTOR (CST, #6893), anti-p-mTOR (ser2448) (CST, #6893), anti-p70S6K (CST, #6893), anti-p-p70S6K (Thr389) (CST, #6893), anti-Akt (CST, #6893), anti-p-AKT (ser473) (CST, #6893), anti-LC3A/B (CST, #6893), anti-γH2A.X (CST, #9718), anti-Rad51 (Abcam, ab133534), Anti-β-actin (Sigma-Aldrich, A1978) and anti-GAPDH (ProteinTech, No. 60004–1).
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9

Multiprotein Expression Analysis in Cells

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The proteins were extracted with RIPA lysis buffer containing several protease and phosphatase inhibitors. The proteins were separated using SDS-polyacrylamide gel electrophoresis and transferred onto polyvinylidene difluoride (PVDF) membranes (item no: IPVH00010; Millipore Co., Boston, MA, USA). Immunoblotting was carried out using monoclonal antibodies: anti-GLUT-1 (cat no. ab40084, 1:200; Abcam), anti-RAD51 (cat no. Ab88572, 1:200; Abcam), anti-PKcs (cat no. Ab70250, 1:200; Abcam), and anti-GAPDH (cat. no. AP0063, 1:4000; Bioworld, Dublin, OH, USA). The membranes were then incubated with secondary antibody, detected using an ECL chemiluminescence assay kit (Beyotime Biological Technology Co. Ltd., Shanghai, China), and visualized by X-ray film exposure. Protein expression was analyzed semiquantitatively using the ChemiDoc XRS+ System (Bio-Rad, Hercules, CA, USA).
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10

Protein Expression Analysis in Cells

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Cells were lysed in mammalian protein extraction reagent (Pierce). After quantification using a BCA protein assay kit (Pierce), total proteins were separated by SDS-PAGE under denaturing conditions and transferred to PVDF membranes (Millipore). Membranes were blocked in 5% non-fat milk (Bio-Rad) and then incubated with anti-CDK7 (Cat No: sc-7344, Santa Cruz Biotechnoloy); anti-BRCA1 (Cat No: sc-6954, Santa Cruz); anti-BRCA2 (Cat No: OP95, Millipore); anti-RAD51 (Cat No: ab213, Abcam); anti-Ku80 (Cat No: MA5–12933, Thermo); anti-Ku70 (Cat No: MA5–15110, Thermo); anti-RNAP II (Cat No: sc-17798, Santa Cruz Biotechnoloy); anti-RNAP II p-Ser5 (Cat No: A300–655A-2, Bethyl); or anti-phospho-H2AX(S139) (Cat No:05–636, Clone No: JBW301, Millipore), followed by incubation with secondary antibodies conjugated with horseradish peroxidase (HRP, GE Healthcare Life Sciences). Anti-b-Tubulin (Cat No: 2128, Clone No: 9F3, CST) or anti-Actin (Cat No: A3854, Sigma) was used for internal loading control. Immunoreactive proteins were visualized using the LumiGLO chemiluminescent substrate (Cell Signaling).
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