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14 protocols using mab5364

1

Immunohistochemistry of Neurotransmitter Markers

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The primary antibodies used for immunohistochemistry were as follows: mouse anti-PV (1:1,000, 235, Swant), rabbit anti-SST (1:2,000, T-4103, Peninsula), mouse anti-RELN (1:1,000, MAB5364, Millipore), rabbit anti-VIP (1:500, 20077, Immunostar), goat anti-SATB1 (1:100, sc5889, Santa Cruz), anti-RFP (1:500, 600–401-379, Rockland), and rat anti-BrdU (1:500, OBT0030G, Accurate Chemicals). The secondary antibodies used for immunohistochemistry, all raised in donkey and used at 1:2,000 dilution, were as follows: anti-mouse Alexa Fluor 488 (A21202, Invitrogen), anti-mouse Alexa Fluor 555 (A31571, Invitrogen), anti-rabbit Alexa Fluor 555 (A31572, Invitrogen), anti-goat Alexa Fluor 488 (A11055, Invitrogen), anti-rat Alexa Fluor 647 (712–606-153, Jackson Immunoresearch), and anti-rat Alexa Fluor 488 (A21208, Invitrogen).
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2

Immunohistochemistry of Brain Sections

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Cryostat sections (20 μm) were washed with PBS, blocked for 1 h with 5% goat serum (16210072, Gibco, New Zealand origin) in PBS and then incubated in the following primary antibodies: anti-Reelin (1:3000, MAB5364, Millipore, Billerica, MA, USA), anti-Tbr1 (1:1000, AB31940, ABCAM, Cambridge, MA, USA) or anti-Calbindin (1:1000, AB1778, Chemicon, Temecula, CA, USA) for 16 h at 4°C in PBS containing 5% goat serum and 0.1% Triton X-100. Sections were subsequently washed with PBS and a second blocking step was performed. Secondary antibody incubation (1:1000) was performed with Anti-mouse-Cy3 antibodies (115–166–003, Jackson Immunoresearch, Bar Harbor, ME, USA), Anti-mouse Cy5 antibodies (115–175–146, Jackson Immunoresearch) or Anti-rabbit Cy3 antibodies (111–166–003, Jackson Immunoresearch) in PBS containing 5% goat serum and 0.1% Triton X-100 for 1 h at room temperature. Sections were then washed with PBS and mounted in Mowiol mounting medium [9% Mowiol 4–88 (475904 Calbiochem, Billerica, MA, USA), 25% Glycerol, 100 mM Tris pH 8.5].
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3

Immunohistochemical Analysis of Interneurons

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Mice were deeply anesthetized and perfused with cold 4% paraformaldehyde solution. The fixed brains were sliced in 50 μm coronal sections using a free-floating vibratome (Leica). Sections were double stained with a primary antibody against GFP (Aves Labs) and GAD67 (Abcam; ab97739)/TUJ (synaptic system; 302302)/SOM (Santa Cruz; sc7819)/PV (Abcam; ab11427)/CR (Millipore; AB5054)/nNOS (Millipore; AB5380)/VIP (Abcam; AB22736)/Reelin (Millipore; MAB5364). Secondary antibodies were anti-chicken Alexa 488 and anti-mouse or anti-rabbit Alexa 594 (Vector; 11039, 11005, 11012 respectively). Nuclei staining were done for 5 min as a final step (Sigma; H33342). Sections were mounted onto charged slides (Fisher Scientific, Superfrost Plus) using Fluoroshield solution (Sigma, F6937).
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4

Comprehensive Antibody Panel for Neural Cell Characterization

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Antibodies for CTIP2 (ab18465, 1:500), CUX1 (ab54583, 1:500), PE-conjugated anti EGFR (ab231, 1:50), LGALS1 (ab25138, 1:1,000), Lin28 (ab46020, 1:1,000), PHH3 (ab5176, 1:250), PLZF (ab104854, 1:100), POU3F2 (ab94977, 1:1,000), SATB2 (ab51502, 1:50), SOX1 (1:1,000), SOX2 (ab79351, 1:500), TBR1 (ab31940, 1:200), TBR2 (ab23345, 1:200) were from Abcam. Antibodies for BrdU (347580, 50 μl per test), KI67 (556003, 1:1,000), phycoerythrin-conjugated (PE) SSEA-3 (560237, 20 μl per test), PE-conjugated F11R (552556; 20 μl per test), Alexa Fluor 647-conjugated TRA-1-60-647 (560850, 5 μl per test), Alexa Fluor 647-conjugated TUJ1 (560340, 1:500) were from BD Biosciences. Antibodies for DCX (AB2253, 1:5,000), O4 (MAB345, 1:25), RELN (MAB5364, 1:200), Tyrosine Hydroxylase (TH, AB152, 1:500) were purchased from Millipore. Antibodies for FABP7 (51010-1-AP, 1:100), S100B (15146-1-AP, 1:100) were from ProteinTech. Antibodies for AP2α (3B5 concentrated, 1:100) and PAX6 (supernatant, 1:16) were from DSHB. Antibody for NESTIN (MO15012, 1:500) was from Neuromics. Antibody for GFAP (Z0334, 1:2,000) was from DAKO. Antibody for β-3-Tubulin (PRB-435P, 1:1,000) was from Covance. Antibody for GLAST (ACSA-1; 130-095-822, 1:10) was from Miltenyi Biotec. Antibody for OTX2 (AF1979; 1:40) was from R&D. Antibody for FOXA2 (SC-6554; 1:100) was from Santa Cruz Biotechnology.
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5

Reelin Expression Dynamics in Kainic Acid-Treated Organotypic Hippocampal Slices

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For the time course analysis of Reelin expression following KA application, OHSC were treated with KA (10 μM) for 45 min followed by incubation in fresh medium. Slices were fixed at 0 (immediately after KA treatment), 1, 2, 3, 4, 6, and 8 h post-KA with 4% paraformaldehyde (PFA, Roth) in 0.1 M phosphate buffer (PB; pH 7.4; 4 h at RT) and subsequently rinsed several times in PB. Immunolabeling for Reelin was performed using a free-floating protocol (Orcinha et al., 2016 (link)). After pre-treatment (0.25% Triton X-100, 10% normal serum in PB, 2 h at RT), slices were incubated (0.1% Triton X-100, 1% normal serum in PB, 24 h at RT) with a mouse monoclonal anti-Reelin antibody (G10, 1:1.000, Millipore, Cat# MAB5364, RRID: AB_2179313). Antibody binding was visualized by incubation with a goat anti-mouse Cy5-conjugated secondary antibody (1:400, RRID: AB_2338714, Jackson ImmunoResearch Laboratories) in the dark (6 h at RT) and counterstained with DAPI (4′,6-diamidino-2-phenylindole; 1:10.000, Roche). Whole slices were dried on glass slides, coverslipped with anti-fading mounting medium (DAKO, Sigma Aldrich, United States) and stored in the dark at 4°C.
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6

Reelin Protein Expression in Rat Brain

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Total protein extracted from the CA1 area of rat brain tissue was subjected to SDS-PAGE on 8% separating gels and electrophoretically transferred to polyvinylidene difluoride membranes (Millipore). The membranes were blocked with 5% nonfat milk and then separately incubated with a 1:500 anti-Reelin monoclonal antibody (MAB5364, Millipore) and 1:1000 anti-β-actin antibody at 4°C overnight. Then the membranes were washed and incubated with a corresponding secondary antibody for 2 hours at room temperature. Reelin blots were normalized to actin blots for each individual lane. Optical densities of the individual bands were visualized using ImageJ for Windows.
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7

Immunofluorescence Labeling of Neural Markers

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Sections were rinsed 3 times for 10 min in 1 x PBS (pH 7.6) at room temperature, then preincubated for 1 hr in 10% normal goat serum in PBST (1 x PBS with 0.5% Triton X-100). Between incubation steps, sections were rinsed in PBST. Sections were incubated with antibodies against tyrosine hydroxylase, raised in rabbit (MB152, Millipore, 1:1000), GFP, raised in chicken (GFP1010, Aveslab, 1:1000), Reelin, raised in mouse (MAB5364, Millipore, 1:1000), or Calbindin, raised in rabbit (300, Swant, 1:1000) for 24 hr in antibody-blocking buffer at 4°C. After three 15 min washes in PBST at room temperature, sections were incubated in a goat anti-rabbit antibody conjugated with Alexa Fluor 488nm (ab150077, Abcam, 1:250), goat anti-chicken antibody conjugated with Alexa Fluor 488nm (A11039, Invitrogen, 1:250), or goat anti-mouse antibody conjugated with Alexa Fluor 488nm (A-11001, Thermo Fisher, 1:250) for 2 hr at room temperature. After rinsing in PBS, sections were mounted onto glass slides with 40, 60-diamidino-2-phenylindole (DAPI)-containing Vectashield mounting medium (Vector Laboratories), and a coverslip was applied. Digital photomicrographs were acquired with an Olympus BX53 fluorescence microscope equipped with a digital camera.
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8

Immunofluorescence Staining Protocol

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Immunofluorescence was performed as previously described [21 (link),22 (link)]. The primary antibodies and dilutions were as follows: anti-Calretinin (Millipore, AB5054, 1:500, Billerica, MA, USA); anti-Ctip2 (Abcam, ab18465, 1:2000, Cambridge, MA, USA); anti-Foxg1 (Abcam, ab18259, 1:1000, Cambridge, MA, USA); anti-GFP (Abcam, ab13970, 1:1000, Cambridge, MA, USA); anti-Lhx2 (Abcam, ab184337, 1:500, Cambridge, MA, USA); anti-P73 (Abcam, ab40658, 1:500, Cambridge, MA, USA); anti-Prox1 (Millipore, AB5475, 1:1000, Billerica, MA, USA); and anti-Reelin (Millipore, MAB5364, 1:1000, Billerica, MA, USA). The secondary antibodies used were Alexa Fluro 488 donkey anti-chicken (Jackson Lab, 703-545-155, 1:500, West Grove, PA, USA), Alexa Fluor 546 donkey anti-rabbit (Life, A10040, 1:500, Gaithersburg, MD, USA), Alexa Fluro 647 donkey anti-rabbit (Life, A31573, 1:500, Gaithersburg, MD, USA), Alexa Fluor 546 donkey anti-rat (Life, A10040, 1:500, Gaithersburg, MD, USA), CF 568 donkey anti-rat (Sigma-Aldrich, SAB4600077, 1:500, St. Louis, MO, USA), CF 633 donkey anti-rat (Sigma-Aldrich, SAB4600133, 1:500, St. Louis, MO, USA), and Alexa Fluro 647 donkey anti-mouse (Invitrogen, A21236, 1:500, Carlsbad, CA, USA).
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9

Immunohistochemical Staining of Neural Markers

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Immunohistochemistry was performed with standard techniques. Cryostat sections were prepared at 18 mm thick. Sections were pretreated with 4% PFA in PBS, and 5% Donkey serum (Jackson) in PBS with 0.1% Triton X-100. Goat anti-NQO1 (Abcam, ab2346), rabbit anti-GFP (Thermo Fisher, A11122), chicken anti-GFP (Aves, GFP-1010), goat anti-OMP (Wako, 019-22291), mouse anti-GAD65 (Abcam, ab26113), mouse anti-GAD67 (Millipore, MAB5406), and mouse anti-Reelin (Millipore, MAB5364) antibodies were used at 1:100, 1:200, 1:200 1:1000, 1:500, 1:500, and 1:100 dilutions, respectively. Alexa Fluor 488, 555, or 647 conjugated secondary antibodies (Thermo Fisher, A11039, A21206, A21432, A21449, A31570, and A31572) were used at 1:200 dilutions. Sections were counterstained with DAPI (Thermo Fisher). Immunostaining with anti-NQO1 and anti-Reelin antibodies was preceded by antigen retrieval in Antigen Retrieval Solution High pH (Dako, S2368) at 65 C for 1 hr and in citrate buffer pH 6.0 at 120 C for 15 min, respectively.
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10

Reelin-enriched Supernatant Production

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To obtain reelin-enriched supernatants and GFP control supernatants, incubation medium [DMEM, penicillin (100 U/ml), streptomycin (100 mg/ml), G418 (0.360 g/liter), 10% FBS] from reelintransfected 293-HEK cells or GFP-transfected control 293-HEK cells (a gift from M. Goetz) was replaced by serum-free medium containing penicillin/streptomycin (100 mg/ml) and cells were incubated for 2 days at 37°C, 5% CO 2 . The conditioned medium was collected and concentrated 40-fold by centrifugation using filter units. Reelin content, as well as its absence in control cell supernatants, was confirmed by Western blotting using mouse anti-reelin antibody 1:1000 (Millipore; MAB5364).
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