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2 protocols using goat anti rabbit irdye800rd

1

Western Blot Analysis of Transcription Factors

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Protein was extracted from 5 ml of log-phase culture using a TCA/NaOH precipitation as described in Volland et al. [57 (link)]. Equal concentrations of protein (25 μg) were run on a NuPAGE 4–12% Bis-Tris gel (Invitrogen, #NP0323BOX) and transferred to a nitrocellulose membrane (Bio-rad 0.2 µm, #LC2009). Primary antibodies used for western blotting: rat anti‐FLAG (Agilent, #200474), mouse anti‐PGK1 (Abcam, #Ab113687), mouse anti‐Rpb3 (Biolegend, #665004), rat anti-S2P (Chromotek, #3E10), rat anti-S5P (Chromotek, #3E8), Rabbit anti-Spt5-P (#1761, kind gift from Prof. Steven Hahn) [27 (link)] and Rabbit anti-Spt5 (kind gift from Prof. Grant Hartzog) [58 (link)]. Secondary antibodies used for western blotting: goat anti-mouse IRDye680RD (LI-COR, #926-68070), goat anti-rat IRDye800RD (LI-COR, #926-32219), goat anti-rabbit IRDye800RD (LI-COR, #925-32211). The Odyssey infrared imaging system (LI-COR Bioscience) was used to visualize proteins-of-interest, and signals quantified by the median method of the Odyssey software. For quantitation, data were normalized against the PGK1 signal unless otherwise stated in the figure legend.
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2

Phosphorylation of eIF2α in Drosophila

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Flies were sacrificed over dry ice and protein was extracted using a standard cell lysis buffer (10 mM Tris-HCl, 1mM EDTA, 10% Glycerol, 1% Triton-X, 150 mM NaCl) containing SIG-MAFAST™ Protease Inhibitor Cocktail (Sigma-Aldrich) and Halt™ Protease Inhibitor Cocktail (ThermoFisher Scientific). Protein homogenates from fly heads were loaded on sodium dodecyl sulfate (SDS) polyacrylamide gels (10% Tris-HCl) and then transferred to nitrocellulose membranes (Bio-Rad) and blocked in Odyssey® TBS Blocking Buffer (LI-COR). Membranes were incubated with rabbit anti-phospho-eIF2α (Ser51) polyclonal antibody (1:1000, Cell Signaling) and mouse anti-eIF2α (L57A5) (1:1000, Cell Signaling), 1:1000. The membranes were subsequently incubated with goat anti-rabbit IRDye®800RD (1:10,000, LI-COR) and donkey antimouse IRDye®680RD secondary antibodies (1:10,000, LI-COR). Protein expression was detected and analyzed using the Odyssey® Infrared Scanner (LI-COR).
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