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5 protocols using anti actin 1 19 sc 1616

1

Western Blot Analysis of Murine Cerebella

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Murine cerebella and cells were lysed in Tris–HCl pH 7.6, 50 mM, deoxycholic acid sodium salt 0.5%, NaCl 140 mM, NP40 1%, EDTA 5 mM, NaF 100 mM, Na pyrophosphate 2 mM and protease inhibitors, while nuclear extraction was performed as already described (Po et al., 2017 (link)).
Lysates were separated on 8% or 6% acrylamide gel and immunoblotted using standard procedures. The following antibodies were used: anti-GLI1 (L42B10, Cell Signaling), anti-CASPASE-3 (D3R6Y, Cell Signaling), anti-β-ARRESTIN1 K-16 (sc-8182; Santa Cruz Biotechnology), anti-ACTIN I-19 (sc-1616; Santa Cruz Biotechnology), anti-E2F1 C-20 (sc-193; Santa Cruz Biotechnology), anti-E2F1 (acetyl K120/K125) (AP10555SU-N, Acris Antibodies); anti-ZIC1 (ab72694; Abcam); anti-PARP p85 Fragment (G7342; Promega), anti-SP1 1C6 (sc-420X; Santa Cruz Biotechnology), anti-PCNA (2586; Cell signaling), anti-H3 (ab 1971, Abcam), and anti-GAPDH (ab8245; Abcam). HRP-conjugated secondary antibodies (Santa Cruz Biotechnology) were used in combination with enhanced chemiluminescence (ECL Amersham).
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2

Western Blot Analysis of Protein Markers

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Western blot was performed as previously described (33 (link)). Cellular pellets were lysed using lysis buffer: Tris-HCl pH 7.6 50 mM, deoxycholic acid sodium salt 0.5%, NaCl 140 mM, NP40 1%, EDTA 5 mM, NaF 100 mM, sodium pyrophosphate 2 mM, and protease inhibitors. Cellular lysates were separated on 8% acrylamide gel and western blot analysis was performed using standard procedures. Membranes were incubated overnight with the following antibodies: anti-Numb (ab4147; Abcam), anti-mouse Nanog (Cosmo Bio Co, Japan), anti-GAPDH (ab8245; Abcam), anti-Actin I-19 (sc-1616; Santa Cruz Biotechnology), anti-mouse Gli1 (#2643; Cell signaling), anti-NeuN (MAB377 Millipore), anti-βIII-tubulin (MAB 1637 Millipore). HRP-conjugated secondary antibodies (Santa Cruz Biotechnology) were applied on membranes and signals were visualized by enhanced chemiluminescence (ECL Advansta). Densitometry was performed using ImageJ software and protein levels were normalized to the respective loading control. Error bars represent mean ± standard deviation of at least three experiments.
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3

Protein Extraction and Western Blot Analysis

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Cells were harvested and extracted with lysis buffer (Hepes 20 mM, pH 8; NaCl 150 mM; EDTA 2 mM; Nonidet P40 1%; SDS 0.1%; sodium deoxycholate 0.5% containing protease inhibitors (Complete mini EDTA free, Roche) and phosphatase (PhosSTOP, Roche). Lysates were centrifuged at 13,000 rpm for 15 min at 4°C, and supernatants collected. Equal amounts of protein were separated by SDS-PAGE, transferred to nitrocellulose membrane (Protran, Whatman) at 30 V overnight at 4°C and blocked with 4% skimmed milk for 2 h. The antibodies used in immunoblotting were as follows: Anti-pATF2 (pThr71) (sc-7982-R, Santa Cruz Biotechnology, Santa Cruz, CA); anti-ATF2 (sc-6233, Santa Cruz Biotechnology, Santa Cruz, CA); anti-c-Jun (sc1694, Santa Cruz Biotechnology, Santa Cruz, CA); anti-MMP9 (AV33090; Sigma); anti-ADAM19 (ARP49780_P050. Aviva Systems Biology); anti-Actin (I 19-sc1616, Santa Cruz Biotechnology, Santa Cruz, CA).
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4

Protein Extraction and Immunoblotting

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Proteins were extracted using a lysis buffer containing 20 mM Tris–HCl, 150 mM NaCl, 1 % TX-100, 1 % protease and phosphatase inhibitors, and subjected to SDS-PAGE using NuPage 4–12 % Bis-Tris gels (Fisher-Thermo Scientific). The following primary antibodies were used: anti- ICAM-1 sc-107 (Santa Cruz), anti-PDI (Cell Signaling), anti-ATF-6α (F-7) sc-166659 (Santa Cruz), anti-p-PERK (Thr 981) sc-32577 (Santa Cruz), anti-NgBR IMG-5342-A (Imgenex), anti-Calnexin 610823BD (BD Transduction Laboratories), anti-GRP75 BiP ab-21685 (Abcam), anti-Actin (I-19) sc-1616 (Santa Cruz).
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5

Western Blot Analysis of ARID2 Protein

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Cells were washed twice in PBS and lysed in RIPA buffer (50 mM Tris-HCl, pH 8.0, 150 mM NaCl, 1 % NP-40, 1 mM Sodium Orthovanadate, 1 mM NaF) containing Halt protease inhibitors Cocktail (Thermo Scientific, ref 87786). Lysates were sonicated using the Bioruptor® (Dia-genode) and cleared by centrifugation at 16,000g for 20 min at 4 °C. Total protein lysates were separated by SDS-PAGE in 8% polyacrylamide gels and transferred to nitrocellulose membranes. Subsequently, membranes were washed with TBS-T (50 mM TRIS + 150 mM Sodium chloride + 0,1% Tween 20, pH 7,4) and blocked using 5% non-fat milk solution as blocking agent in TBS (50 mM TRIS + 150 mM Sodium chloride) for 1 h at RT. Membranes were then incubated with primary antibodies anti-ARID2 (E-3, sc-166117, Santa Cruz) and anti-Actin (I-19, sc-1616, Santa Cruz), diluted 1:200 and 1: 1,000 in TBS-T/5% (w/v) BSA at 4°C overnight, respectively. Donkey anti-mouse or donkey anti-goat secondary antibodies (LI-COR Biotechnology, Lincoln, USA) conjugated to IRDye 800CW (926-32212) or IRDye 680RD (926-68074) respectively were used as secondary antibodies and visualized using Odyssey Clx imager (LI-COR Biotechnology, Lincoln, USA).
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