The largest database of trusted experimental protocols

7 protocols using anti ask1

1

Assessing Synthetic Amylin Internalization

Check if the same lab product or an alternative is used in the 5 most similar protocols
Antioxidant N-acetyl cysteine (NAC) (Sigma, MO) was used at a working concentration of 5 mM. Ask1 inhibitor NQDI1 (R&D Systems) and JNK inhibitor (JK1) (Abcam) were used at a working concentration of 10 µM. Lactacystin (Lac) (Calbiochem, CA) was used at a concentration of 10 µM. H2O2 (Sigma) and diamide (Sigma) were used at working concentrations of 500 µM and 1mM respectively. Anti-PARP (rabbit, sc-7150), anti-actin (goat, sc-1616), anti-ASK1 (goat, sc-6368), anti-phospho-ASK1 (rabbit, sc-1099), anti-caspase-3 (goat, sc-1224), anti-JNK (rabbit, sc-572) and anti-phospo-JNK (goat, sc-12882) polyclonal primary antibodies were purchased from Santa Cruz Biotechnology. Insulin antibody (sc-9168) was purchased from Santa Cruz Biotech. For detection of overexpressed human amylin in transgenic mice islets, mouse monoclonal anti-human antibody (Santa Cruz Biotech., sc-377530) was used. For detection of internalized synthetic human amylin, rabbit polyclonal anti-amylin antibody (Santa Cruz Biotech., CA sc-20936) was used. While both anti-amylin antibodies show high binding affinity toward pro- and pre/pro-human amylin isoforms, only polyclonal anti-hA antibody detects synthetic human amylin (Figure S1A), which was used in amylin internalization studies (Fig. 1C) [41 (link)].
+ Open protocol
+ Expand
2

Antibody Validation and ER Stress Assays

Check if the same lab product or an alternative is used in the 5 most similar protocols
Anti-V5, FLAG and GAPDH antibodies were purchased from Proteintech. Anti-α-Tubulin and anti-HA antibodies were purchased from Sigma. Anti-Sox2, Nanog and Oct4 antibodies were purchased from Abcam. The following antibodies were used: anti-FKBP9 (Invitrogen), anti-Calnexin (Santa Cruz), anti-Nestin (R&D Systems), anti-pmTOR (Invitrogen), anti-pP70S6K (Millipore), anti-pERK1/2 (Promega), anti-p65 (EPITOMICS), anti-ASK1 (Santa Cruz), anti-pASK1 (Santa Cruz), anti-pIRE1α (NOVUS). Other antibodies for immunoblotting were purchased from Cell Signaling Technology. Aggresome Detection Kit was purchased from Abcam. Thapsigargin (Tg) and tunicamycin (Tm) were purchased from Apexbio. Proteasome inhibitor MG132 and lysosomal inhibitors Bafalomycin A1 (Baf A1) and chloroquine (CQ) were obtained from Sigma. Drugs were dissolved and stored at − 20 °C or − 80 °C according to the instructions.
+ Open protocol
+ Expand
3

Inhibition of IRE1 Endonuclease Activity

Check if the same lab product or an alternative is used in the 5 most similar protocols
Irestatin (inhibitor of the endonuclease IRE1) was purchased from Axon Medchem (Groningen, The Netherlands). The inhibitor of IRE1 RNase activity, 4μ8c, was purchased from Millipore. NAC was purchased from Sigma‐Aldrich (St. Louis, MO, USA). Lipopolysaccharide was purchased from Invitrogen (Carlsbad, CA, USA). The following primary antibodies were used for Western blotting: anti‐GRP78/Bip, anti‐phospho‐eIF2α, anti‐CHOP, anti‐caspase‐3, anti‐PERK, and anti‐phospho‐JNK (p‐JNK; Cell Signaling, Danvers, MA, USA) and anti‐IRE1α, anti‐β‐actin, anti‐ATF6, and anti‐ASK1 (Santa Cruz Biotechnology, Dallas, TX, USA).
+ Open protocol
+ Expand
4

Western Blot Analysis of Mitochondrial Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
As previously described [31 (link)], cell lysates were diluted in Laemmli buffer, separated by polyacrylamide gel electrophoresis (SDS-PAGE), and transferred to PVDF membranes. Membranes were blocked in 5% non-fat dry milk before incubating overnight at 4˚C in rabbit polyclonal anti-Trx2 (1:250, Santa Cruz, sc-50336), rabbit polyclonal anti-Prx3 (1:1,000, Thermo Fisher Scientific, LF-PA0030), rabbit polyclonal anti-TrxR2 (1:1,000, Abcam, ab58445), rabbit polyclonal anti-ASK1 (1:500, Santa Cruz, sc-7931), rabbit polyclonal anti-pASK1 (1:1,000, Cell Signaling, 3765), rabbit polyclonal anti-Bax (1:1,000, Santa Cruz, sc-493), mouse monoclonal anti-Bak (1:1,000, EMD Millipore, AM03) or rabbit polyclonal anti-β-actin (1:1,000, Sigma Aldrich, A2066). Membranes were then incubated with anti-rabbit or anti-mouse (1:5,000, Southern Biotechnology) HRP-conjugated secondary antibodies and immune complexes were detected by chemiluminescence captured and analyzed on a UVP bioimaging system (Upland, CA). Semi-quantitative analyses of immunoblots were performed using Image Studio (LI-COR).
+ Open protocol
+ Expand
5

Quantitative Western Blot Analysis of p-ASK1

Check if the same lab product or an alternative is used in the 5 most similar protocols
To assess the levels of p-apoptosis signal-regulating kinase-1 (ASK1) equal amounts of total homogenate (50 μg) were diluted in Laemmli sample buffer, boiled for 5 min. and separated on pre-cast 4–12% SDS-PAGE gels (Criterion XT, Bio-Rad Laboratories, Milan, Italy). Proteins were blotted onto polyvinylidene difluoride (PVDF) Hybond membranes, which were then incubated overnight at 4°C with (rabbit) anti-p-ASK1 pSer83 antibody (GenWay Biotech Inc.; rabbit, San Diego, CA, USA) anti-ASK1 (Santa Cruz Biotechnology Inc., Dallas, TX, USA). After washing, membranes were incubated with peroxidase-conjugated secondary antibodies for 1 hr. Immunolabelled bands were detected with a SuperSignal West Dura (Pierce, Rockford, IL, USA) and quantified with the aforementioned software for image analysis.
+ Open protocol
+ Expand
6

ASK1 Immunoprecipitation in Platelets

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunoprecipitation was performed as previously described [16 (link)]. Briefly, washed human platelet suspension (4 x 108 platelets/mL) was stimulated with thrombin (1U/mL) for 3 min at room temperature. Platelet suspensions were lysed by the addition of an equal volume of ice-cold 2X lysis buffer to reach a final concentration of (1% Triton X-100, 150mM NaCl, 50 mM Tris-HCl pH 7.5, 10μg/mL leupeptin, 10μg/mL aprotinin, 1mM NaF, 1mM sodium orthovanadate, and 1mM PMSF). Pre-cleared lysates were incubated with anti-ASK1 [Santa Cruz Biotechnology, 1:100] for IP of human ASK1, or normal rabbit IgG [Santa Cruz Biotechnology, 1:100] and the immunoprecipitation was performed as described [16 (link)]. Precipitate was western blotted with anti-ASK1, anti-CIB1, anti-TRAF6, and anti-Trx1 antibodies.
IP of mouse Ask1 followed the above protocol with the following modifications. Briefly, washed mouse platelet suspension (4 x 108 platelets/mL) was stimulated with thrombin (1U/mL) for 1 min at room temperature before being lysed with ice-cold 2X lysis buffer. Lysates were then incubated with anti-ASK1 [Cell Signaling, 0.23 μg/mL] for IP of mouse Ask1, or normal rabbit IgG [Santa Cruz Biotechnology, 0.23μg/mL] as control and the immunoprecipitation was performed as described [16 (link)]. Precipitate was western blotted with anti-ASK1 and anti-Traf6 antibodies.
+ Open protocol
+ Expand
7

Western Blotting of ER Stress Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell pellets were prepared as described53 (link) and western blotted with the following antibodies: anti-IRE1α (ab37073; 1 : 1500) from Abcam (Cambridge, MA, USA); anti-β-actin (A1978; 1 : 5000) from Sigma-Aldrich; anti-PERK (sc-13073; 1 : 1000), anti-ATF6α (sc-22799; 1 : 1000), anti-GADD153 (sc-575; 1 : 1000), anti-ASK1 (sc-7931 and sc-5294; 1 : 1000 for WB, 1 : 100 for IP and PLA), anti-caspase-12 (sc-70227; 1 : 1000), anti-GRP78 (sc-1050; 1 : 1000), anti-TRAF2 (sc-7346; 1 : 1000), and anti-calpain (sc-7530; 1 : 1000) (Santa Cruz Biotechnology); anti-ryanodine receptor (MA3-916; 1 : 1000) (Thermo Scientific, Hudson, NH, USA); anti-InsP3R (07-1210; 1 : 2000 for WB, 1 : 300 for IP, 1 : 100 for PLA) and anti-CIB1 (MAB2601; 1 : 1500 for WB, 1 : 500 for IP, 1 : 100 for PLA) (Millipore, Schwalbach, Germany); and anti-calreticulin (2891; 1 : 2000), anti-calnexin (2433; 1 : 2000), anti-cleaved caspase-9 (9501; 1 : 2000), anti-caspase-9 (9502; 1 : 2000), and anti-caspase-3 (9662; 1 : 2000) (Cell Signaling Technology, Beverly, MA, USA). Immunoreactive bands were photographed and quantified on LAS-3000 with MultiGauge (Fuji Film Inc., Tokyo, Japan).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!