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GFP (FL) is a fluorescent protein derived from the jellyfish Aequorea victoria. It is a well-established tool used in various biological applications, including cell biology, molecular biology, and genetic engineering. The core function of GFP (FL) is to serve as a fluorescent marker, allowing researchers to visualize and track specific proteins or cells within a sample.

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7 protocols using gfp fl

1

SART3 and RAD18 Protein Interactions

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SART3 cDNA was a gift from Dr. Jiahuai Han (Xiamen University). SFB (S-Flag–Streptavidin binding peptide)- and Myc-tagged RAD18 plasmids were gifts from Dr Jun Huang (Zhejiang University). Full-length and truncations of SART3 were PCR amplified and cloned into pEGFP-C3 (Clontech) or pCMV5-Flag to generate GFP- or Flag-tagged fusion proteins. Full-length and truncations of Polη were amplified and cloned into p2xFlag-CMV-14 (Sigma) or pEGFP-C3 vector.
Anti-Flag M2 agarose affinity gel, mouse monoclonal antibody against Flag and BrdU for labeling ssDNA were purchased from Sigma (St. Louis, MO, USA). Antibody against BrdU was from BD science. Antibodies against RAD18 for western blotting, SART3 and RPA32 were from Abcam. Anti-RAD18 antibody for immunofluorescence was purchased from Bethyl Laboratories. Antibodies against CPD was from Cosmo Bio Co (Tokyo, Japan). Monoclonal Antibodies against PCNA (PC10) and GFP (FL) were from Santa Cruz Biotechnology. Antibody against USP1 was from Cell Signaling Technology. Alexa Fluor-555-labeled goat anti-mouse-IgG was from Invitrogen.
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2

Western Blotting and Immunoprecipitation Protocol

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For western blotting, cells were lyzed in EBC250 lysis buffer. Whole-cell lysates were separated by SDS–PAGE, transferred to PVDF membranes, and hybridized to an appropriate primary antibody and HRP-conjugated secondary antibody for subsequent detection by ECL. Antibodies used include actin (C-11, Santa Cruz Biotechnology), Ac-p53-K382 (2525P; Calbiochem, La Joya, CA, USA), GFP (FL; Santa Cruz Biotechnology), p21CIP1 (SXM-30; BD Pharmingen, San Diego, CA, USA), p53 (DO-1, Santa Cruz Biotechnology), phospho-Akt (Cell Signaling Technology, Danvers, MA, USA), SIRT1 (07-131, Upstate Biotechnology, Lake Pacid, NY, USA), and PAI-1 (D9C4, Cell Signaling Technology). For IP analyses, cells were lyzed in EBC150 buffer. Whole-cell lysates were precleared with protein A bead slurry (Upstate Biotechnology), incubated with an appropriate antibody at 4 °C overnight, and subsequently captured with protein A bead slurry (Upstate Biotechnology) for 3 h. Immunoprecipitates were subjected to western blot analyses.
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3

Western Blot Antibody Sourcing

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Rabbit polyclonal antibodies against c-myc (A-14) and GFP (FL) were purchased from Santa Cruz Biotechnology. Rabbit polyclonal antibodies against GAPDH were purchased from Proteintech. Mouse monoclonal antibodies against vinculin, clone hVIN-1, were purchased from Sigma Aldrich (St. Louis, MO, USA). Mouse monoclonal antibodies against enterovirus VP1 (NCL-entero) were purchased from Novocastra (Buffalo Grove, IL, USA). XtremeGene HP plasmid transfection reagent was purchased from Sigma Aldrich. Brefeldin A (Invitrogen, Carlsbad, CA, USA) was dissolved in DMSO and used at a final concentration of 5 µg/mL. Also, 2-aminoethoxydiphenylborane (2APB, Sigma Aldrich) was diluted in DMSO and used at a final concentration of 100 µM.
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4

Immunoblotting and Protein Detection

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Samples were resolved by SDS-PAGE (7.5–15% gels), transferred to Immobilon-P membranes (Millipore Inc.) and immunoblotted as indicated. Primary antibodies were used to detect Cox IV (3E11, Cell Signaling), cytochrome c (D18C7, Cell Signaling), Drp1 (BD Biosciences; D6C7, Cell Signaling; H-300, Santa Cruz biotechnology), Flag (Sigma), GAPDH (Abcam), GFP (FL, Santa Cruz biotechnology; Roche), GST (GE Healthcare), HA (Sigma), Mff (Proteintech; Sigma), RhoGDI (Abcam), SENP3 (D20A10, Cell Signaling), and β-actin (Sigma). Immune complexes were detected either using HRP-conjugated secondary antibodies (Sigma) followed by enhanced chemiluminescence (Thermo Scientific Pierce) or using fluorescent secondary antibodies (LI-COR). Each immunoblot presented is representative of at least three experiments carried out using different cell populations.
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5

Cell Culture and Antibody Use

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COS7, HeLa and MDA-MB-231 cells were grown in DMEM supplemented with 10% FCS, 1% pyruvate. PC3 cells were grown in RPMI supplemented with 10% FCS. All media contained 100 µg/ml streptomycin and 100 U/ml penicillin. The following antibodies were used: myc tag (A-14, sc-789, or 9E10, sc-40; Santa Cruz Biotechnology), GFP (FL) (sc-8334; Santa Cruz Biotechnology), Cullin3 (611848; BD), ROCK1 (611136; BD), ROCK2 (610623; BD), HA tag (3F10; Sigma–Aldrich), pMLC2 (Thr18/Ser19) (#3674, Cell Signaling), MLC2 (#3672, Cell Signaling), RhoA 67B9 (#2117, Cell Signaling), GAPDH (MAB374, Merck Millipore). Secondary horseradish peroxidase (HRP)-labelled antibodies were from GE Healthcare (anti-mouse, anti-rat and anti-rabbit). Complete protease inhibitor cocktail and PhosphoStop were from Roche. Active recombinant human GST-ROCK1 (17–535, # R10–11G) was from SignalChem. MLN4924 was from BostonBiochem (R&D Systems). H1152 Rho kinase inhibitor was from Calbiochem.
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6

Proximity Ligation Assay for Protein Interactions

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Cells were fixed by 4% paraformaldehyde 15 min, followed by permeabilization and blocking procedures. Cells were incubated with primary antibodies (1:100 dilution), CD36 (SMφ, Santa Cruz Biotechnology) x GFP (FL, Santa Cruz Biotechnology) and CAV-1 (N20, Santa Cruz Biotechnology) x hSTOM (E6, Santa Cruz Biotechnology) at 4 °C overnight. After washing cells by 1x Wash Buffer A, the cells were incubated with the PLUS and MINUS PLA probes for 1 h at 37 °C. Tap off the PLA probes solution and wash cells with Wash Buffer A twice. The ligation solution was applied and incubated with cells for 30 min at 37 °C. After the wash step, cells were incubated with the amplification solution for 100 min at 37 °C. Finally, wash cells two-time using 1x Wash Buffer B, followed by one-time 0.01x Wash Buffer B. The cells were mounted and analyzed in a confocal microscope.
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7

Immunohistochemistry for Skeletal Muscle

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Mouse anti-human nuclei (1:50) (Millipore MAB1281), Pax7 (1:500), Pax3 (1:500), Myogenin (1:500) (Developmental Studies Hybridoma Bank), Laminin (C-20) (1:200) (Sigma), Laminin (1:400) (Abcam), MyoD (C-20) (1:100), Desmin (RD301) (1:50), and GFP (FL) (1:50) (Santa Cruz).
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