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6 protocols using k4002

1

Immunohistochemistry for ELOVL5 and Ki67 in Breast Cancer

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Paraffin-embedded tumor breast tissue samples from breast cancer patients with or without metastasis were deparaffinized and rehydrated. Tissue sections were saturated with peroxidase blocking buffer and incubated with a primary antibody against ELOVL5 (#HPA047752; Sigma-Aldrich) for 1 h. After washing, HRP polymer-conjugated secondary antibodies (K4002; Dako) were then incubated with the tissue sections for 20 min followed by a 5-min coloration with 1 g/ml of DM827-3, 3’-diaminobenzidine (DAB). Hematoxylin and eosin staining was used to visualize nuclei. Tissue sections were mounted with an organic mounting solution from Dako. Quantification of ELOVL5 staining was analyzed with QuPath 0.2.3 [50 (link)] after slides were scanned by Nanozoomer controlled by NDP.view scan software (Hamamatsu). Data are presented as the average H-score of ELOVL5 expression in each slide comparing tumor and adjacent non-tumoral tissues.
For Ki67 staining, the protocol is as above using a primary antibody against Ki67 (#MIB-1 clone; Agilent) and an anti-mouse HRP polymer-conjugated secondary antibody (K4000; Dako). The H-score correlations between ELOVL5 and Ki67 are demonstrated by comparing the tumoral matching zones of the same patient.
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2

Apoptosis and Proliferation Analysis in Tumor Tissue

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After animal sacrifice by cervical dislocation, tumors and multiple organs were resected and embedded in paraffin. Four micrometer sections were generated followed by immunohistochemistry: Sections were fixed with 4% paraformaldehyde (Sigma), washed, and stained with terminal deoxynucleotidyl transferase dUTP nick end labeling (TUNEL) indicative of apoptotic cells (life technologies, USA), and 4′,6-diamidino-2-phenylindole (DAPI) for labelling cell nuclei. The depth of tissue penetration in tumor nodes was determined by detecting the deepest apoptosis cluster (n = 14 mice with five measurements per tumor node). Proliferating cells were stained with anti-mouse Ki-67 (IHC00375; Bethyl, USA) and HRP labelled anti-rabbit antibodies (K4002; Dako, USA), and DAB substrate (Dako) was added before hematoxylin staining and mounting of samples on microscopy slides using Faramount (Dako). For determination of the cell proliferation index, Ki-67 positive cells and Ki-67 negative cells were counted manually. Tissue sections were microscopically investigated using a Keyence BZ-9000 microscope and evaluated with BZ-II-Analyzer 4.6.2.2 software (Keyence, Japan).
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3

Immunohistological Analysis of Arterial Biopsies

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Normal appearing, non-atherosclerotic internal mammary artery biopsies, collected at coronary bypass surgery as described before [35 (link)], and inner lining of atherosclerotic carotid artery, collected at endarterectomy surgeries, were employed for immunohistological analyses. Upon collection, the specimens were fixed in PBS (10 mmol/L phosphate, 150 mmol/L NaCl, pH 7.2), buffered 4% formaldehyde and subsequently embedded in paraffin. Sections of arterial samples (4 μm) were incubated overnight at 4°C with rabbit polyclonal antibody H-190 (Santa Cruz Biotechnology, Inc.; dil.:1/100), which recognizes an epitope common to all fibulin-1 isoforms (A-D). Envision system HRP-conjugated secondary antibodies were used (K4002, Dako) for detection. Diaminobenzidine (DAB+, K3468; Dako) was applied for 50 seconds and stopped in H2O. Control sections were incubated with secondary antibody only. Caluminin and reticulocalbin staining was done with rabbit polyclonal antibodies affinity purified and tested as previously described [14 (link)] using UltraView Universal Alkaline Phosphatase Red Detection Kit from Ventana Medical Systems.
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4

Immunohistochemical Analysis of EHMT2 in Breast Tumors

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The EnVision+ kit/HRP kit (Dako, Carpinteria, CA, USA) was used for immunohisto-chemical staining. Paraffin-embedded sections of breast tumor specimens were processed in a microwave (90˚C) with an antigen-retrieval solution (pH 9, S2367; Dako) and treated with a peroxidase-blocking reagent followed by a protein-blocking reagent (K130, X0909; Dako). Tissue sections were incubated (4°C, 12 h) with a rabbit anti-EHMT2 antibody (1/500 dilution) (CSB-PA007497GA01HU; Cusabio, Houston, TX, USA), followed by incubation (room temperature, 1 h) with an HRP-conjugated secondary antibody (K4002; Dako). Immunoreactivity was visualized with a chromogenic substrate (Liquid DAB Chromogen; Dako). Finally, tissue specimens were stained (room temperature) with Mayer’s hematoxylin solution (Hematoxylin QS; Vector Laboratories) for 20 sec to discriminate the nucleus from the cytoplasm. Human BRC tissues were purchased from Biochain Institute Inc. (T8235731-2; Newark, CA, USA)
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5

Screening FDA-Approved Compounds for Chondrogenesis

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The Prestwick Chemical Library was purchased from Prestwick Chemical (Illkirch-Graffenstaden, France) and supplied in a special academic format with the 1280 FDA-approved compounds at 10 mM concentration in DMSO, in 16 96-well format plates, each containing 80 compounds.
Resveratrol (CAS no. 501-36-0, Enzo Life Sciences, Farmingdale, NY, USA) and dipyridamole (CAS no. 58-32-2, Sigma, Buchs, SG, Switzerland) were dissolved in DMSO and prepared as 1 M and 200 mM stock solutions, respectively.
Recombinant human BMP2 [rhBMP2; Chinese hamster ovary (CHO)-derived, R&D Systems, Minneapolis, MN, USA] was prepared as a 100 µg/ml stock solution in 4 mM HCl containing 0.1% bovine serum albumin (BSA; Sigma-Aldrich, Buchs, SG, Switzerland).
Antibodies for western blot analyses were: anti-p-Smad1/5 (13820S, Cell Signaling, Danvers, MA, USA), anti-GAPDH (MAB3749, Millipore, Billerica, MA, USA), and horseradish peroxidase (HRP)-conjugated anti-rabbit and anti-mouse secondary antibodies (Dako, Glostrup, Denmark). For immunohistochemical analyses, the following antibodies were used: rabbit anti-bovine polyclonal antibody anti-collagen type II (AB746P, Millipore, Billerica, MA, USA), rabbit polyclonal antibody anti-Sox9 (AB5535, Millipore, Billerica, MA, USA), and anti-rabbit (K4002) and anti-mouse (K4000) EnVision System-HRP Labelled Polymer (Dako, Glostrup, Denmark).
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6

Immunohistochemical Analysis of Kidney Tissues

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Paraffin-embedded kidney tissues were cut into 5-µm sections and deparaffinised. Sections were permeabilised with PBST for 3 days at 4 °C and incubated with primary antibodies against DsRed2 overnight at 4 °C. Next, sections were incubated with the Envision + System horseradish peroxidase-labelled polymer anti-rabbit IgG (K4002, Dako, Glostrup, Denmark) for 30 min at room temperature (RT), then visualised with 0.01% DAB containing 1% nickel in 0.05 M Tris-HCl buffer (pH 7.6) for 60 min at RT. Sections were also stained with H&E and observed under light microscopy (NIS element BR 3.0; Nikon).
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