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10 protocols using donkey anti goat sc 2020

1

Protein Expression Analysis in Leptin-Induced Cells

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Preparation of cell lysates, SDS-polyacrylamide gel electrophoresis and western blot analysis were carried out as previously described [15 ]. Mouse monoclonal SOCS-3 antibody (sc-51699), rabbit polyclonal iNOS antibodies (sc-651 and sc-650), goat polyclonal cyclooxygenase-2 (COX-2) antibody (sc-1745) and rabbit polyclonal β-actin antibody (sc-1615R), and secondary horseradish peroxidase (HRP)-conjugated goat anti-mouse (sc-2005), goat anti-rabbit (sc-2004) and donkey anti-goat (sc-2020) antibodies were all from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Rabbit polyclonal MMP-13 antibody (ab39012) was from Abcam (Cambridge, MA, USA). Leptin-induced iNOS and COX-2 expression was determined by running the control and leptin-induced samples side by side and the result is given as fold of change in the β-actin-normalized densitometry value of the leptin-induced versus the control sample.
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2

Protein Immunoblotting Assay

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Twenty-five to fifty micrograms of protein lysates were analyzed by SDS polyacrylamide gel electrophoresis (PAGE). After transfer to a 0.45-µm nitrocellulose membrane (GE Healthcare, Amersham, Thermo Fisher Scientific) and blocking in 10 mM Tris–HCl (pH 8.0), 150 mM NaCl, and 0.05% (v/v) Tween 20 (TBST) containing 2.5% (w/v) skim milk, specific proteins were identified using primary antibodies for 16 to 18 h at 4 ℃. A secondary antibody [donkey anti-goat (sc-2020; Santa Cruz), goat anti-rabbit (1706515; Bio-Rad), or goat anti-mouse (1706516; Bio-Rad)] conjugated to horseradish peroxidase, and a luminol enhancer detection system (32106, Pierce, Thermo Fisher Scientific) were used to visualize the proteins.
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3

Protein Extraction and Western Blotting Protocol

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Protein extraction and Western blotting were performed as described31 (link) using the following primary antibodies: goat anti-FGF9 (AF-273-NA, 1:2,000; R&D Systems), rabbit anti-phospho-ERK (#9101, 1:1,000; Cell Signaling Technology, Danvers, MA, USA), rabbit anti-phospho-JNK (#9251, 1:1000; Cell Signaling Technology) and mouse anti-actin (MAB1501, 1:10,000; Merck Millipore, Billerica, MA, USA). Donkey anti-goat (sc-2020; 1:1,000; Santa Cruz Biotechnology, Heidelberg, Germany), chicken anti-rabbit (sc-2955; 1:10,000; Santa Cruz Biotechnology) and horse anti-mouse (Santa Cruz Biotechnology, sc-2005, 1:3,000) were used as secondary antibodies.
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4

β-Adrenergic Receptor Quantification

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[3H]CGP12177 (specific activity 41.6 Ci/mmol) was purchased from Perkin Elmer Health Sciences (Toronto, ON, Canada). Antibodies against rat β1-AR (Ab3546) were purchased from AbCam (Cambridge, MA, USA). Antibodies against β2-AR (SC-570), β3-AR (SC-1473), and GAPDH (SC-32233) were purchased from Santa Cruz Biotechnologies (Santa Cruz, CA, USA). Secondary horseradish peroxidase conjugated IgG antibodies goat anti-rabbit (SC-2004), donkey anti-goat (SC-2020), and donkey anti-mouse (SC-2314) were also purchased from Santa Cruz Biotechnology.
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5

Immunoblotting and Immunofluorescence Protocols

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For immunoblotting, the following antibodies were used: rabbit anti-IKK1/2 (sc-7607), rabbit anti-Mac2/galectin-3 (sc-20157), rabbit anti-Erk2 (sc-154), HRP-conjugated goat anti-mouse (sc-2005), goat anti-rabbit (sc-2004), and donkey anti-goat (sc-2020) from Santa Cruz Biotechnology (Heidelberg, Germany). Mouse anti-β-amyloid (6E10, sig-39320) from Covance (Munich, Germany) and goat anti-Lcn2 (AF1857) from R&D (Minneapolis, MN, USA). For proper quantitative analysis, donkey anti-mouse and donkey anti-rabbit IRDye 680LT-conjugated secondary antibodies (#926-68022 and #926-68023) as well as donkey anti-mouse and anti-rabbit IRDye 800CW-conjugated secondary antibodies (#926-32212 and #926-32213) from LI-COR® were used:
For immunofluorescent staining, the following antibodies were used: goat anti-GFAP and rabbit anti-Mac2/galectin-3 (sc-20157) from Santa Cruz Biotechnology (Heidelberg, Germany), chicken anti-GFAP (ab6476) from Abcam (Berlin, Germany), rabbit anti-Iba1 (019-19741) from WAKO (Neuss, Germany), and mouse anti-β-amyloid (4G8, sig-39320) from Covance (Munich, Germany). Alexa Fluor labeled secondary antibodies (488, 568/594, and 647) were obtained from Invitrogen (Waltham, MA USA) and DAPI was purchased from MERCK (Darmstadt, Germany).
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6

Western Blotting of Signaling Proteins

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Western blots were performed essentially as described in [32 (link)] with the following modifications: a protease inhibitor cocktail (Roche, 1:25) was used and no additional dithiothreitol was added to the sample mix including loading dye. Aliquots of cell lysates were further applied for Western blot analysis as published previously [15 (link)]. The following proteins were detected by specific antibodies: OPN (M66105M, Meridian Life Science, Memphis, TN, USA), PI3Kinase p110 β (#3011), pPDK1 (#3438), pAkt (#13038P), pmTOR (#5536) (Cell signaling technology, Frankfurt, Germany), and β-actin (sc1615, Santa Cruz, Heidelberg, Germany), which served as internal loading control. The respective horseradish-peroxidase-conjugated secondary antibodies were donkey anti-goat (sc2020), goat anti-mouse (sc2055) (Santa Cruz), and goat anti-rabbit (#7074, Cell signaling technology).
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7

Immunoblotting Optimized Procedure

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Immunoblotting was done as described in (Yosifov et al. 2007 (link)), but a proteinase inhibitor cocktail (Roche, 25x) was used and additional dithiothreitol was not included to the sample mix and loading dye. Aliquots of the cell lysates were further analyzed as described before (Kovacheva et al. 2014 (link)). Specific antibodies detected the following proteins: integrin β3 (sc-46655) and β-actin (sc1615) (Santa Cruz, Heidelberg, Germany). Beta-actin served as internal loading control. The respective horseradish-peroxidase-conjugated secondary antibodies were goat anti-mouse (sc 2055) and donkey anti-goat (sc2020) (Santa Cruz, Heidelberg, Germany).
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8

Reg3β and SIS Western Blot Assay

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Whole organoid lysates were prepared with a lysis buffer containing 8 M urea. 15 μg of proteins from each CI994-treated and untreated condition were separated on 4–12% Bis-Tris NuPage precast gels (Life Technologies) and transferred to PVDF blotting membranes (Roche Applied Science). Western blotting was performed as described previously21 (link). Antibodies used were: goat anti-Reg3β (AF1996, R&D Systems), goat anti-SIS (sc-27603, Santa Cruz Biotechnology), mouse anti-actin (MAB-1501, EMD Millipore), donkey anti-goat (sc-2020, Santa Cruz Biotechnology) and goat anti-mouse (sc-2005, Santa Cruz Biotechnology). Immune complexes were detected with Amersham ECL™ Western blotting detection reagents (GE Healthcare), according to the manufacturer’s instructions.
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9

Western Blot Antibody Validation Protocol

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The following antibodies were used for blotting: polyclonal goat anti-mouse κ LC (1050–01, SouthernBiotech); mouse anti-GAPDH (MAB374, Millipore); mouse anti-Hsc70 (B-6) (sc-7298, Santa Cruz Biotechnology), mouse anti-VCP/p97 (ab11433, abcam, Cambridge, MA), mouse anti-20S proteasome subunit alpha (C8) (PW8110, Biomol, Hamburg, Germany), rabbit anti-PSMC2 (HPA019238, Sigma-Aldrich), mouse anti-actin (A5441, Sigma-Aldrich), rabbit anti-PDIA6 (NBP157999, Novus Biologicals). HRP-conjugated antibodies were used at 1:10,000 dilution and include goat anti-rabbit (sc-2054), donkey anti-goat (sc-2020), and goat anti-mouse (sc-2031) all purchased from Santa Cruz Biotechnology. The rabbit anti-ERdj3 antibody was produced in our lab (Shen and Hendershot, 2005 (link)). IRdye® secondary antibodies (LI-COR Biosciences, all 1:20,000): goat anti-mouse IgG (925–32210), goat anti-rabbit IgG (925–68071), and donkey anti-goat IgG (926–68074).
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10

Western Blot Protein Analysis

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Twenty-five to fifty micrograms of protein lysates were analysed by SDS polyacrylamide gel electrophoresis (PAGE). After transfer to a 0.45 l nitrocellulose membrane (GE Healthcare, Amersham, Thermo Fisher Scientific), visualization of blotted protein with ponceau S (Applichem A2935) and blocking in 10 mM Tris-HCl pH 8.0, 150 mM NaCl and 0.05% (v/v) Tween 20 (TBST) containing 2.5% (w/v) skim milk, specific proteins were identified using primary antibodies for 16-18 h at 4 °C. A secondary antibody [donkey anti-goat (sc-2020; Santa Cruz), goat anti-rabbit (1706515; Bio-Rad, Feldkirchen, Germany) or goat antimouse (1706516; Bio-Rad)] conjugated to horseradish peroxidase, and the luminol enhancer detection system (32106, Pierce, Thermo fisher Scientific) was used to visualize the proteins.
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