The largest database of trusted experimental protocols

14 protocols using c10600

1

Ratiometric Ca2+ Imaging in Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were loaded with 5 μM Fura-2/AM in DMEM at 37 °C for 30 min. Ratiometric Ca2+ imaging was performed at 340 and 380 nm in 2 mM Ca2+ Tyrode’s solution (129 mM NaCl, 5 mM KCl, 2 mM CaCl2, 1 mM MgCl2, 30 mM glucose, and 25 mM Hepes, pH 7.4) or cultued medium with a IDX81 microscope (Olympus) equipped with an Olympus x40 oil (NA 1.30) objective equipped with a fluorescent arc lamp (LAMDA LS), excitation filter wheel (SUTTER, LAMBDA 10–2), stage controller (ASI, MS-2000) and a CCD camera (HAMAMATSU, C10600) at room temperature. Images were processed with Metamorph and analyzed with Igor Pro.
+ Open protocol
+ Expand
2

Observing Cell Aggregation Dynamics

Check if the same lab product or an alternative is used in the 5 most similar protocols
The aggregation phenotype was directly observed after cell resuspension, after addition of 10 mM of EDTA (ethylenediaminetetraacetic acid) and after further addition of 400 μM of CaCl2. Aggregation phenotypes were observed in test tubes, by optical microscopy at low magnification (Zeiss Stemi DV4 Stereo Microscope, Oberkochen, Germany) and at high magnification (Zeiss Axio Observer Z1 equipped with Hamamatsu camera C10600, Oberkochen, Germany).
+ Open protocol
+ Expand
3

Bioinspired Polydopamine Cell Probes for Single-Cell Force Spectroscopy

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell probes were prepared using triangular shaped tipless cantilevers (microlevers) (catalog no. NP-O10; Bruker Corporation) coated with bioinspired polydopamine wet adhesives. Cantilevers were immersed for 1 h in a 10 mM Tris buffer solution (pH 8.5) containing 4 mg ml−1 dopamine hydrochloride (99%; Sigma) and dried with N2 flow. Single cells were then attached onto the polydopamine-coated cantilevers using a Bioscope Catalyst AFM (Bruker Corporation). Hydrophobic substrates were prepared by immersing gold-coated substrates overnight in solutions of 1 mM 1-dodecanethiol (Sigma-Aldrich) (98%), rinsing them with ethanol, and drying them under N2. To have cell aggregates on the hydrophobic surface, we deposited a drop of a cell suspension and allowed it to sediment for 10 to 15 min, and the cells were covered with 4 ml of PBS. Then, the cantilever was brought into contact with an isolated cell for 3 min, and the obtained cell probe was then transferred over a cell aggregate for cell-cell force measurements. The nominal spring constant of the cantilever was ∼0.06 N m−1 as determined by the thermal noise method. Single-cell force spectroscopy measurements were performed at room temperature (20°C) in PBS, using a Bioscope Catalyst combined with an inverted optical microscope (Zeiss Axio Observer Z1 equipped with a Hamamatsu camera C10600 [Oberkochen, Germany]).
+ Open protocol
+ Expand
4

Adhesion of Staphylococcus pseudintermedius to Fibronectin

Check if the same lab product or an alternative is used in the 5 most similar protocols
Microtiter wells were coated overnight at 4°C with 1 μg/well human Fn in 0.1 M sodium carbonate (pH 9.5). The plates were washed with PBS containing 0.5% (vol/vol) Tween 20 (PBST). To block additional protein-binding sites, the wells were treated for 1 h at 22°C with 2% (vol/vol) bovine serum albumin (BSA) in PBS. The wells were then incubated for 1 h at 37°C with 1 × 108 cells of the S. pseudintermedius strain ED99 or its mutants. After being washed with PBS, adhering cells were fixed with 2.5% formaldehyde for 30 min and stained with 1% crystal violet for 1 min. Following several washings, 100 μl of 10% acetic acid were added, and absorbance at 595 nm was recorded in a plate reader (Bio-Rad). To test the inhibitory effect of soluble N29, the adhesion assay was performed as above in the presence of 5 μg N-terminal domain (N29) of Fn.
Adhesion of S. pseudintermedius ED99 and derivative mutants was also assessed on Fn-functionalized surfaces (see below) using optical microscopy in static conditions. Bacterial suspensions in PBS were incubated on Fn surfaces for 2 h at 37°C, gently rinsed with PBS, and imaged using an optical microscope Zeiss Axio Observer Z1 and a Hamamatsu camera C10600.
+ Open protocol
+ Expand
5

Immunofluorescence Imaging of Golgi Apparatus

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells cultured on glass coverslips (Bellco Glass) were fixed with fresh 3.7% paraformaldehyde and permeabilized with 0.5% Triton X-100. Fixed and permeabilized cells were blocked with 3% (BSA) and incubated with mouse anti-GM130 primary antibody (BD Biosciences, 610822) and DAPI (Invitrogen). The secondary antibody was Cy3-conjugated goat anti-mouse IgG (Jackson, 711-165-152). Fluorescence images were acquired with a PlanApo/N 60/1.42 NA objective on an Olympus IX81 microscope. Hamamatsu C10600 camera gain and exposure time settings were controlled with Metamorph Basic. Processing of images (merging, brightness, and final size) was performed using Fiji software62 (link)63 (link).
+ Open protocol
+ Expand
6

Immunofluorescence Analysis of Androgen Receptor

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells cultured on glass coverslips (Bellco Glass, Vineland, NJ) were fixed with 4% paraformaldehyde in PBS for 20 minutes at room temperature and permeabilized with 0.5% Triton X-100 in PBS for 3 minutes. The coverslips were incubated with rabbit anti-AR H-280 antibodies and DAPI (Life Technologies, CA). The secondary antibody was labeled with Alexa Fluor 488 (Life Technologies, CA). Fluorescence images were acquired with a 40x/0.60 n.a. LUCPlan FLN objective on an Olympus IX81 microscope. Hamamatsu C10600 camera gain and exposure time settings were controlled with Metamorph Basic. Nuclear fluorescence intensities were measured with ImageJ (NIH).
+ Open protocol
+ Expand
7

Phenotypic Analysis of Neuronal Development

Check if the same lab product or an alternative is used in the 5 most similar protocols
For phenotypic analysis of neuronal development, animals were anaesthetized on 5% agarose pads containing 20 mM NaN3. Images were taken using an automated fluorescence microscope (AXIO Imager M2; Carl Zeiss) and Zen 2012 software, equipped with objectives (EC Plan-NeoFluor 20x/0.5 and 40x/0.75 and Plan Apochromat 63x/1.4 oil DIC and 100x/1.4 oil DIC; Carl Zeiss) and an ORCA-R2 camera (C10600; Hamamatsu Photonics). For in vivo calcium imaging, C. elegans in L4 stage expressing the Ca2+ sensor Cameleon YC3.60 were immobilized with 0.10 µM polystyrene microspheres (Polybead; Polysciences Inc.) on a glass slide coated with a 10% agarose pad. The rab-3::cameleonYC3.60 strain was obtained from N. Ringstad (New York University Langone Medical Center, New York, NY).Temperature was maintained at 25°C during which two ventral motor neurons, most anteriorly and posteriorly to the vulva, were imaged. Calcium imaging was performed as described in the In vitro calcium imaging section. Post-acquisition analysis was performed using Volocity 3D analysis software 6.3 (PerkinElmer).
+ Open protocol
+ Expand
8

Yeast Cell Viability Assessment using BacLight

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell viability during FluidFM experiments was estimated using BacLight (Invitrogen, kitL7012), a kit traditionally used for bacteria but which has also been shown to work efficiently with yeasts.47 (link) A staining solution was prepared by mixing 1.5 μL of Syto9 stain and 1.5 μL of propidium iodide (PI) and 3 μL of this solution were added to 3 mL of fungal suspension diluted in PBS. Stained cells were imaged with an inverted fluorescence microscope (Zeiss Axio Observer Z1 equipped with a Hamamatsu camera C10600). Images were recorded with a 10× objective lens and recorded with a CCD camera. Fluorochromes were, respectively, excited and detected at 455–495 and 505–555 nm (for Syto9) and at 533–558 and 570–640 nm (for PI). To demonstrate our ability to record signal from both fluorochromes, a disinfectant solution (neoform MED rapid, VWR) was added to the suspension at the end of the experiment to kill the cells which fluorescent signal turned red as expected.
+ Open protocol
+ Expand
9

Quantifying DNA Damage Foci by Automated Microscopy

Check if the same lab product or an alternative is used in the 5 most similar protocols
Automated wide-field microscopy was performed on an Olympus ScanR system (motorised IX83 microscope) with ScanR Image Acquisition and Analysis Software, 40×/0.6 (LUCPLFLN 40× PH) dry objectives and Hamamatsu ORCA-R2 digital CCD camera C10600. Numbers of anti-phospho-Histone H2AX (S139) foci (Alexa 488; FITC filter) were quantified in the nuclear region colocalising with DAPI, after first gating for cells based on area and circularity factor, using Olympus ScanR Analysis software.
+ Open protocol
+ Expand
10

Customized Luminescence Imaging System

Check if the same lab product or an alternative is used in the 5 most similar protocols
A CCD camera was used for image acquisition (C10600, Hamamatsu, Bridgewater, New Jersey) with a F1.4/12 mm lens (HR961NCN, Navitar, Rochester, New York). These components were integrated into a light-insulated luminescence imager that was designed using Solidworks CAD software and 3D printed on a commercially available large-format 3D printer (gMax 1.5+ , gCreate, Brooklyn, New York) using black polylactic acid (PLA, Hatchbox, Los Angeles, California). Several imager designs were produced for applications ranging from in vitro to large animal studies. Light isolation was accomplished using shaped compressible polyurethane (PU) and polyethylene (PE) foam (McMaster-Carr, Douglasville, Georgia).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!