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8 protocols using ha tag monoclonal antibody

1

Antibody Procurement and Detection

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SERCA2 ATPase Antibody (MA3-919) was procured from Invitrogen (Carlsbad, USA). HA Tag Monoclonal Antibody was procured from Thermo Fisher Scientific (Rockford, USA). Anti-PPRV serum that predominantly reacts with PPRV HN, F, and M proteins and anti-NDV serum that predominantly reacts with NDV F and HN proteins (in Western blot) are described elsewhere by our group (Khandelwal et al., 2017 (link)). Secondary fluorescein isothiocyanate (FITC)-conjugated anti-rabbit antibody and secondary tetramethylrhodamine isothiocyanate (TRITC)-conjugated anti-mouse antibody were purchased from Sigma (Steinheim, Germany).
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2

Quantitative Analysis of Outer Membrane Vesicle Proteins

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Protein profiles of OMV samples were analyzed using SDS-PAGE and Coomassie G-250 (BioRad) staining. Densitometric analysis on Coomassie-stained gels was carried out using a Molecular Imager GS-800 Calibrated Densitometer and ImageJ software1. To quantify protein ligation efficiencies, the respective densities of protein bands corresponding to ligated and non-ligated Hbp fractions were calculated after correcting for the difference in molecular mass. Quantifications were performed on samples of a representative experiment and correspond to the Coomassie-stained gels shown, where appropriate. For immunodetection of protein samples after Western blotting, monoclonal anti-FLAG M2 antibody (F3165; Sigma), and HA tag monoclonal antibody (2-2.2.14; ThermoFisher Scientific) were used.
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3

Visualization of HA-tagged US28 and F-actin in NHDFs

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NHDFs (1.0x105) were added to each microscope coverslip and maintained at 37°C and 5% CO2. NHDFs were transfected with 1μg of either HA-US28 or HA-US28-BT using Lipofectamine 2000 according to manufacturer’s instructions. At 16 hours, cells were fixed with 4% paraformaldehyde in PBS, permeabilized in 0.25% Triton-X100 in PBS, and blocked with 2% bovine serum albumin 0.1% Triton-X100 in PBS. Cells were stained with HA tag monoclonal antibody coupled with Alexa Fluor 488 (1:1,000 dilution; ThermoFisher) and Phalloidin-Alex Fluor 647 (1:1,000 dilution; ThermoFisher) in blocking buffer. Coverslips were washed with PBS and mounted using Fluoromount-G. Images were captured with a Leica Stellaris 8 confocal microscope using Leica Application Suite X software version 4.5.0 (Leica Microsystems).
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4

Western Blot Analysis of Protein Extracts

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Western blot analysis was performed as described in Wang et al. (2011) (link). The total protein was extracted by using the Plant Protein Extraction Kit (CWBIO, China) from 20-days-old seedlings grown in NP conditions. The total protein (60 μg) was separated on a 12% SDS-polyacrylamide gel and transferred to a nitrocellulose filter membrane (Amersham, USA). The membrane was blocked with 5% milk in phosphate-buffered saline. The primary antibody [HA Tag monoclonal antibody (1:5000, Thermo Fisher, United States)] and the secondary antibody [goat anti-mouse IgG-HRP (1:3000, Sangon, China)] were used for the Western blot. The blotted membrane was incubated with ECL luminous solution MaxiLumin-WB (Biokits tech Inc., China) and visualized using an Odyssey FC imaging system (LI-COR, United States).
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5

Western Blotting of HA-Tagged Proteins

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Western blotting was performed as described by Wang et al. (2011) (link). The primary antibody [HA Tag monoclonal antibody (1:5000, Thermo Fisher, United States)], and the secondary antibody [goat anti-mouse IgG(H+L)-HRP (1:5000, Beijing Protein Innovation, China)] was used for the Western blot. The blotted membrane was detected using an Odyssey FC imaging system (LI-COR, United States).
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6

Immunoblotting of Fungal Transcription Factors

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Protein extracts were obtained from whole cell extracts of the IV.1, MRR1HA, TAC1bHA, and UPC2HA strains after precipitation with trichloroacetic acid as previously described (33 (link)). Proteins were separated through electrophoresis using Mini-PROTEAN TGX gel (Bio-Rad Laboratories, Hercules, CA) and blotted onto nitrocellulose membranes. Mrr1p, Tac1bp, and Upc2p were detected by primary HA Tag Monoclonal Antibody (Invitrogen, ThermoFisher Scientific, Waltham, MA) with 1/2,500 dilution in 5% bovine serum albumin in phosphate-buffered saline with 1% Tween (BSA-PBS-T) and secondary Goat anti-Mouse IgG (H + L) antibody (Invitrogen, ThermoFisher Scientific, Waltham, MA) with 1/500 dilution in BSA-PBS-T.
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7

Western Blot Analysis of Protein Targets

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Protein lysates were prepared and quantified by using Pierce™ BCA Protein Assay Kit (Thermo Fisher Scientific, Waltham, MA, USA, #23225). NuPAGE™ 4–12% Bis-Tris Protein Gels and the respective running buffer (Thermo Fisher Scientific; Waltham, MA, USA, #NP0321PK2, #NP0001) were used for separation of 20 μg of each protein sample. Blotted membranes were blocked with 5% milk for 1 h, incubated overnight at 4 °C with the primary antibodies (HA tag monoclonal antibody (26183, Invitrogen, 1:5,000), anti-CYBA antibody (sc-271968, Santa Cruz, Heidelberg, Germany 1:250), anti-TRPM4 antibody (ab123936, Abcam, Cambridge, UK, 1:1000) and loading control alpha tubulin antibody (ab4074, Abcam, Cambridge, UK, 0.25 μ/mL) and subsequently for 1 h at room temperature with anti-rabbit IgG antibody (7074S, Cell Signaling Technology, Frankfurt, Germany, 1:10,000) and anti-mouse IgG antibody (7076S, Cell Signaling Technology, Frankfurt, Germany, 1:2500) diluted in 5% milk. The membranes were washed, and signals were detected by Immobilon Western Chemiluminescent HRP substrate (WBKLS0500, Millipore, Burlington, MA, USA) and scanned by INTAS Chemostar.
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8

Immunostaining of HA-tagged Proteins

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The same immunostaining protocol was followed above for HA-tagged proteins except the primary stain contained HA Tag Monoclonal Antibody (Invitrogen, cat#26183, 1:250) and cells were shaken overnight at 4°C.
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