The largest database of trusted experimental protocols

Stratagene mx3000p instrument

Manufactured by Agilent Technologies
Sourced in Switzerland, United States

The Stratagene Mx3000P is a real-time PCR instrument designed for quantitative gene expression analysis. It features a dual-block design, allowing for the simultaneous processing of two separate samples. The instrument utilizes a high-intensity lamp and six-color filter set to enable the detection of multiple fluorescent dyes within a single reaction.

Automatically generated - may contain errors

5 protocols using stratagene mx3000p instrument

1

qPCR analysis of RPGRIP1 expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Five nanograms (ng) of genomic DNA, 200 nM of each primer and 10 μl of Fast SYBR Green Master Mix (Life Technologies, Grand Island, NY) were used for qPCR reactions which were performed on a Stratagene Mx3000P instrument (Agilent Technologies) using the standard thermocycling program (95 °C for 3 min, 40 cycles of 95 °C for 20 s, and 60 °C for 1 min, followed by a melting curve). The ddCT method was used for the analysis of results where ZNF80 was used as a reference gene and an in-house DNA sample with wild type RPGRIP1 (OGI200) used for normalization. Each sample was tested in triplicate and the average value was used. Standard deviation with error propagation was used to calculate up and down errors.
+ Open protocol
+ Expand
2

RNA Extraction and qPCR Analysis of Brain Regions

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted from the cerebrum and hippocampus using TRIzol reagents (15596-026, Life Technologies, Carlsbad, CA, USA). cDNA synthesis was performed using a reverse transcription kit (SG-cDNAS100; Smartgene, Daejeon, Republic of Korea). Quantitative PCR was carried out using SYBR Green (SG-SYBR-500, SmartGene, Ecublens, Switzerland) on a Stratagene Mx3000P instrument (Agilent Technologies, Santa Clara, CA, USA). The thermal protocol comprised three steps. In the first step, the temperature was maintained at 95 °C for 3 min. The second step involved 40 cycles, with each cycle comprising a denaturation step at 95 °C for 15 s, an annealing step at 60 °C for 15 s, and an extension step at 72 °C for 30 s. Finally, the third segment involved a melt curve analysis, involving a denaturation step at 95 °C for 10 s, an annealing step at 65 °C for 5 s, and a final extension step at 95 °C for 50 s. Transcript levels were determined by analyzing the cycle threshold and monitoring the amplification curve, with Rplp0 utilized as the internal control. The primer sequences can be found in Table 2.
+ Open protocol
+ Expand
3

Quantification of Lung iNOS mRNA by qRT-PCR

Check if the same lab product or an alternative is used in the 5 most similar protocols
The mRNA level of iNOS in lung tissue was determined by quantitative real-time polymerase chain reaction (qRT-PCR) as described previously (Rungsung et al. 2018 (link)). In brief, total RNAs were isolated from the collected lung tissues with the help of Trizol reagent (TAKARA, Beijing, China) and were finally dissolved in diethylpyrocarbonate (DEPC; MACKLIN, Shanghai, China)-treated ddH2O. Afterwards, the first strand of cDNA synthesis was fulfilled using a BeyoRT™ III First Strand cDNA Synthesis Kit (Beyotime Biotechnology, Shanghai, China). Then, the iNOS expression was determined using BeyoFast™ SYBR Green One-Step qRT-PCR Kit (Beyotime Biotechnology) with a Stratagene Mx3000P instrument (Agilent Technologies, California, USA). GAPDH was used as the internal control, and the 2-ΔΔCt method was used to calculate iNOS expression. The sequences were as follows: inducible nitric oxide synthase (iNOS) (Forward) 5′-GGTGCTATTCCCAGCCCAA-3′, (Reverse) 5′-AGTCACATGCAGCTTGTCCA-3′; GAPDH (Forward) 5′-AGACAGCCGCATCTTCTTGT-3′, (Reverse) 5′-CCGATACGGCCAAATCCGTT-3′.
+ Open protocol
+ Expand
4

Pharyngeal Arch Gene Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Control and mutant embryos isolated at 31–32 somite stage were used for these experiments. The regions containing either the left or the right pharyngeal arches 3–6 were dissected and stored in liquid N2 until use. RNA was isolated using RNeasy plus micro kit (Qiagen) and cDNA was synthesized using SuperScript VILO cDNA synthesis kit (Life Technologies). The PCR was performed using PerfeCTa SYBR green supermix with low ROX (cat #95056-100, Quanta Biosciences) and Stratagene Mx3000P instrument (Agilent Technologies). The primers for detecting 18S RNA were 5′-GTAACCCGTTGAACCCCATT-3′ and 5′-CCATCCAATCGGTAGTAGCG-3′, the primers for detecting integrin α5 were 5′-CCTTTTTGGCTTCTCCGTGG-3′ and 5′-ACCACCTTGCAGTACACCTG-3′, and the primers for detecting Tbx1 were 5′-TCAAGGCTCCGGTGAAGAAG-3′ and 5′-TGGAACGTGGGGAACATTC-3′.
+ Open protocol
+ Expand
5

qPCR analysis of RPGRIP1 expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Five nanograms (ng) of genomic DNA, 200 nM of each primer and 10 μl of Fast SYBR Green Master Mix (Life Technologies, Grand Island, NY) were used for qPCR reactions which were performed on a Stratagene Mx3000P instrument (Agilent Technologies) using the standard thermocycling program (95 °C for 3 min, 40 cycles of 95 °C for 20 s, and 60 °C for 1 min, followed by a melting curve). The ddCT method was used for the analysis of results where ZNF80 was used as a reference gene and an in-house DNA sample with wild type RPGRIP1 (OGI200) used for normalization. Each sample was tested in triplicate and the average value was used. Standard deviation with error propagation was used to calculate up and down errors.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!