The largest database of trusted experimental protocols

6 protocols using ab70287

1

Quantifying Renal Interstitial Fibrosis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Renal histology was assessed by staining 5 µm-thick kidney sections with Masson’s Trichrome stain and analysed through microscopy. Interstitial fibrosis was quantified by measuring collagenous fibrotic areas stained in 10 random cortical fields/section from images taken at a magnification of 40× using multiphase image analysis with ImageJ software version 1.53c [55 (link)].
Immunofluorescence staining was performed as follows. Histological sections (5 μm thick) were deparaffinised, hydrated, and subjected to antigen-retrieval. The slides were blocked with 3% BSA/PBS for 30 min, permeabilised in 0.2%Triton-X100/PBS for 6 min at 4 °C, and then incubated with the primary antibodies: anti-non phospho active β-catenin (1:100, 8814s, Cell Signaling Technology, Danvers, MA, USA), anti-NGAL (1:100, ab70287, Abcam, Cambridge, UK), and anti-CD45 (1:100, ab10558, Abcam, Cambridge, UK) overnight at 4 °C. After three washes with PBS, the sections were incubated with Alexa Fluor 488 fluorescence secondary antibody (1:1000, Life technology, New York, NY, USA) and Alexa Fluor Texas red (1:1000, Life technology, New York, NY, USA) for 1 h at room temperature. Following three washes, the sections were stained with DAPI, mounted with fluorescent mounting media, and analysed via microscopy. Sections labelled with only secondary antibodies served as controls
+ Open protocol
+ Expand
2

Immunohistochemical Analysis of Allograft Rejection

Check if the same lab product or an alternative is used in the 5 most similar protocols
Full cross sections of allografts were immediately fixed in acid methanol (60% methanol and 10% acetic acid). Paraffin-embedded sections (5 mm) were subjected to high temperature antigen retrieval and paraffin removal in Trilogy (Cell Marque, Hot Springs, AR) in a pressure cooker. Endogenous peroxidase activity was blocked by incubation with 0.3% H2O2, and nonspecific protein interactions were blocked by incubation with a serum-free protein block (DAKO, Carpinteria, CA). The following primary antibodies were used to detect CD4 (ab183685), CD8 (ab217344), LCN2 (ab70287), PD-1 (ab214421) and Ki-67 (ab16667) from Abcam (Cambridge, MA), granzyme B (AF1865) and PD-L1 (rabbit MAB 90781; clone 2096C from R&D Systems, Minneapolis, MN). The primary antibody to mouse C4d was a previously described and validated polyclonal rabbit antibody 28 (link). Primary antibodies were visualized using rat, rabbit, and goat on mouse HRP-Polymer Kits (Biocare Medical, Concord, CA) as secondary antibodies followed by diaminobenzidine (DAB). For double stains Vina green, Vulcan Fast Red (Biocare Medical, Concord, CA) or Vector Blue (Vector Laboratories, Burlingame, CA) chromogens were used. Sections were counterstained with hematoxylin or Periodic acid-Schiff (PAS) from Richard-Allan Scientific (Kalamazoo, MI).
+ Open protocol
+ Expand
3

Histological Assessment of Kidney Injury

Check if the same lab product or an alternative is used in the 5 most similar protocols
Kidney tissues were fixed in 10% formalin, dehydrated, and embedded in paraffin for hematoxylin and eosin (H&E) and periodic acid-Schiff (PAS). The degree of tubular injury was scored based on the percentage of injured tubules: 0, 0%; 1, ≤10%; 2, 11–25%; 3, 26–45%; 4, 46–75%; and 5, 76–100% [20 (link),21 (link)]. IHC staining was conducted using antibodies against neutrophil gelatinase-associated lipocalin (NGAL; 1:100; ab70287; Abcam, Cambridge, MA, USA), 4-hydroxynonenal (4-HNE; 1:100; ab48506; Abcam, Cambridge, MA, USA) or galectin-3 (1:100; ab2785; Abcam, Cambridge, MA, USA). Then, the sections reacted with HRP-conjugated secondary antibodies. The FITC-labeled lotus tetragonolobus lectin (LTL; 1:100; FL-1321; Vector Laboratories, Burlingame, CA, USA) was used to detect the brush border of proximal tubules. Nuclei were counterstained with DAPI. Quantification of positive staining for NGAL, 4-HNE, or LTL was analyzed using an image-analyzing software (IMT i-Solution, Coquitlam, BC, Canada) in 10 random fields per sample. The number of galectin-3-positive cells was counted in 10 random fields per sample.
+ Open protocol
+ Expand
4

Immunohistochemical Analysis of Kidney Injury Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Mouse kidney tissue was fixed in 4% paraformaldehyde for 3 days and dehydrated using an alcohol gradient. The tissue was then immersed in an ethanol–xylene (1:1) mixture in xylene for 15–20 min until the tissue became transparent. Transparent tissue was placed in a mixture of paraffin and xylene (1:1) for 1 h, followed by paraffin embedding. Paraffin sections were cut into 5-μm-thick sections and dried in a 37°C incubator. The immunohistochemistry kit was purchased from MXB Biotechnologies (KIT-9710 and DAB-0031, China). Renal tissue paraffin slices were washed with water and subjected to antigen retrieval. The slices were then incubated with primary antibodies against Kim-1 (Abcam, 1:200, ab78494), NGAL (Abcam, 1:200, ab70287), and the appropriate biotin-conjugated secondary immunoglobulin G (1:1000, S0001, Affinity, USA). After mounting the slices, co-stained images were captured using a Nikon Eclipse 90i fluorescence microscope.
+ Open protocol
+ Expand
5

Analyzing Kidney Tubule Damage in Mice

Check if the same lab product or an alternative is used in the 5 most similar protocols
Paraffin-embedded mouse kidney sections (4-μm thickness) were prepared for Periodic acid Schiff (PAS) staining (Abcam, Cambridge, UK). Percentages of intact, moderately, and severely damaged renal tubules were quantified on ten non-overlapping high-power cortical fields of PAS-stained sections by three blinded examiners as previously described [28 (link)] using the following criteria: Intact tubules are identified by normal morphology. Complete loss of cell nuclei indicated severely damaged tubules. Tubules with dilatation, cast formation, brush border loss were counted as moderately damaged tubules. Immunohistochemical staining of neutrophil gelatinase-associated lipocalin (NGAL) (ab70287, Abcam) was performed [25 (link)]. For double immunostaining of β-catenin and NGAL, sections were incubated with antibodies against rabbit anti-mouse β-catenin (ΕP-35, Becton, Dickinson and Company, Franklin Lakes, NJ) plus rat anti-mouse NGAL at 4 °C overnight, followed by incubation with anti-rat horseradish peroxidase (HRP) plus rabbit alkaline phosphatase (AP) polymer for 30 min. Permanent Red and Emerald chromogens were used for color development (red color from AP and blue color from HRP).
+ Open protocol
+ Expand
6

Immunohistochemistry of Brain Sections

Check if the same lab product or an alternative is used in the 5 most similar protocols
To increase epitope retrieval, selected brain sections were placed in citrate buffer at 85°C for 40 min, blocked in 4% normal donkey serum and incubated in 0.2 % Triton X-100 with rat anti- lipocalin-2 (LCN2, 1:300; Ab70287; Abcam), goat anti- cluster of differentiation 31 (CD31, 1:300, AF3628, R&D systems) and rabbit anti- glial fibrillary acidic protein (GFAP, 1:250, Z0334, Dako ) or aquaporin 4 (AQP4, 1:200, BSBTPB9475, BosterBio) antibodies overnight at 4°C. Sections were then incubated in corresponding secondary antibodies produced in donkey and labelled with Alexa Fluor 488, 594 and 647 (1:200, Invitrogen) at room temperature for 2 h, counterstained with DAPI solution and mounted on slides using Antifade Mounting Medium (Vector Laboratories). Brain sections were examined and visualized using laser scanning confocal microscope Zeiss (LSM 800). Z-stacks of images were captured from brain sections with z-plane step size of 2.0 μm using 20× air objective lens and processed using Fiji software version 1.53c to create maximum projection of z-stacks for presenting the results. For a detailed view, a z-stack was captured with a 63x oil immersion objective using 2x zoom and z-plane step size of 0.2 μm. 3D visualization was created using Fiji software version 1.53c.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!