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Gc 2014 gas chromatography

Manufactured by Shimadzu
Sourced in Japan

The GC-2014 is a gas chromatography system manufactured by Shimadzu. It is designed to separate and analyze volatile and semi-volatile organic compounds in complex mixtures. The instrument uses a carrier gas, such as nitrogen or helium, to transport the sample through a stationary phase column, where the components of the sample are separated based on their differences in boiling point and affinity for the column material. The separated compounds are then detected and quantified by the system's detectors.

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8 protocols using gc 2014 gas chromatography

1

Extraction and Quantification of Intracellular PHA

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After shake-flask growth, cells were harvested by centrifugation (CR21 GIII, Hitachi, Japan) at 8000 × g for 10 min, washed twice with distilled water, and placed in −80 °C for 4 h. After cells lyophilizing for 12 h, their intracellular PHA was extracted using a Soxtec 2050 Soxhlet extractor (Foss, Denmark). PHA polymers were purified by re-dissolving the extracted materials in chloroform, then precipitated using absolute ethanol, centrifuged at 12,000 × g for 10 min to harvest the purified PHA materials, followed by lyophilization again to remove residual ethanol.
The dry cell mass was determined by weighing 30 mL lyophilized centrifuged bacterial cells. For the esterification reaction, 40–60 mg lyophilized cells were placed into a 2 mL esterification reagent containing 3% sulfuric acid and 0.1% benzoic acid, both dissolved in absolute methanol. After adding 2 mL chloroform, the whole reaction was performed at 100 °C for 4 h. PHA contents were determined by GC-2014 gas chromatography (Shimadzu, Japan). P3HB (99.9%, Sigma-Aldrich, Germany) was used as standards, respectively. The peak of benzoic acid was regarded as the internal standard.
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2

Catalytic Oxidation of 1-Hexene to Epoxide

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The oxidation reactions were carried with catalyst (25 mg), 1-hexene (5 mmol), and H2O2 (5 mmol) in methanol (5 mL) in a 20 mL glass reactor with 60 °C oil bath with stirring for 2 h. After reaction, the mixture was analyzed using Shimadzu GC-2014 gas chromatography (Kyoto, Japan) with a 30 m TC-1 capillary column and a flame ionization detector. Internal standards of cyclohexanone were used to calculate the mole of the reactants and epoxides. The H2O2 was determined with Ce(SO4)2 solution (0.1 M). The conversion and selectivity of epoxide (SEpoxide) and efficiency of H2O2 (SH2O2) were calculated by the following equations:


i and f represent initial and final molar value, respectively.
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3

Anaerobic Fermentation Analysis Protocol

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During the experiment, pH was monitored for each anaerobic culture tube using a Senseline pH meter F410 (ProSense, Oosterhout, Netherlands). Samples were harvested as described above and used to quantify the amounts of short chain fatty acids (SCFA) and lactate. SCFAs were extracted with diethyl ether and analyzed using a GC-2014 gas chromatography (Shimadzu) instrument as described previously using a 1 μL injection volume (32 (link)). A commercially available kit (R-Biopharm, Darmstadt, Germany) was used to determine lactate levels following the manufacturer’s guidelines. SCFAs detected were acetate, propionate, butyrate, valerate, and branched chain SCFAs (BCSCFAs), isobutyrate, isovalerate, and isocaproate. Total SCFAs were calculated as the sum of all SCFAs listed.
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4

Quantifying Short-Chain Fatty Acids

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Samples of the communities were harvested at 0-, 6-, and 24-h post-inoculation and subject to analysis for the abundance of short-chain fatty acids (SCFA) and gas levels in the reactors. SCFA analysis was performed as described previously using the GC-2014 gas chromatography (Shimadzu) instrument (30 (link)). Detected SCFAs included: propionate, butyrate, acetate, valerate, isobutyrate, isovalerate, and isocaproate. Total SCFAs were calculated through summation of all SCFA levels, and total branch-chained SCFAs (BCFAs) were calculated through summation of isobutyrate, isovalerate, and isocaproate.
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5

Ethylene Production in Tomato Ripening

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Tomato fruits of WT, nor#11, OE-NOR in WT#2, and nor mutant at different ripening stages (MG, Br, B+3, B+6, and B+9) were harvested, weighed, and placed at room temperature for 2 h to avoid measuring ‘wound ethylene’. Subsequently, each fruit was transferred into 300 ml gas-tight jars, tabbed, sealed, and incubated at room temperature. After 2 h, 1 ml gas samples were withdrawn immediately and then analysed by GC-2014 gas chromatography (Shimadzu, Japan). At least three biological replicates, each with three technical replicates, were performed for each sample. Ethylene concentrations were calculated by comparing sample peak areas with ethylene standards of known concentration, ethylene production (nl g−1 h−1) was calculated by the following formula: Ethylene production (nl g−1 h−1)=[C×(300−M)/M]/2, where C is ethylene concentration and M is the mass of the fruit.
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6

Biodiesel Quality Monitoring Protocol

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Throughout the reaction 15 mL samples were taken at regular intervals to monitor the progress of the reaction. The 15 mL samples were centrifuged at 500 rpm for 2 min to give an upper oil phase and a lower polar phase. A sample from each phase is then analysed using Quality Trait Analysis (QTA) based on infrared spectrometry. The infrared spectra of the samples were read from a Bruker Tensor 27 FT-IR (Massachusetts, USA) and analysed by the Eurofins QTA central processor. For the upper oil phase results are returned for the TAG, DAG, MAG and FFA in mass % and for the lower polar phase results are returned for water, methanol and glycerol in mass %. It should be noted at the time of writing the reported calibration ranges for TAG, DAG, MAG and FFA in the upper oil phase are 0-9.9, 0-5.5, 0-2.9 and 0-80 mass % respectively. Subsequently the BG value was calculated according to ASTM D6584 using Equation 1.
(1) Additionally, the fatty acid methyl ester (FAME) is determined only at the end of the reaction using a GC-2014 gas chromatography (Shimadzu, Kyoto, Japan) to ensure the biodiesel is within specification (>96.5 mass % FAME).
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7

Synthesis and Characterization of Tetrachloropentaerythrithiol

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The samples were analyzed using gas chromatography (GC; Shimadzu gas chromatography GC-2014 equipped with a Shimadzu auto injector AOC-201). 1H- and 13 C-NMR spectra were recorded using a JEOL JNM-ECS400 (1H-NMR 400 MHz, 13C-NMR 100 MHz). 1H-NMR spectra are reported as follows: chemical shift in ppm relative to the chemical shift of CHCl3 at 7.26 ppm, integration, and multiplicities (d = doublet). 13C-NMR spectra were reported in ppm relative to the central line of the triplet for CDCl3 at 77 ppm. Tetrachloropentaerythrithiol was synthetized in Asahi Chemicals Co., Ltd. (Osaka, Japan) from pentaerthrithiol by Perstorp Chemical, Malmӧ, Sweden. TBAB was purchased by Lion specialty chemical. Toluene was obtained from Ando Chemicals. NaSH was purchased by Sankyou Kasei. Sulfur was purchased from Hosoi Kagaku Kougyou (Osaka, Japan). The NaClO solution was purchased from Nacalai Tesque, Inc. (Kyoto, Japan).
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8

Biosynthesis of P(3HB-co-4HB) Copolymer

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The bacteria strains used in this study were Cupriavidus malaysiensis USMAA1020 transformant harbouring additional PHA synthase gene from Cupriavidus malaysiensis USMAA2–4 to produce P(3HB-co-95 mol% 4HB) copolymer. The biosynthesis was carried out as previously described [23 (link)]. A preculture of 5% (v/v) of the working volume was transferred into 20 L fermenter (Biostat® C plus, Sartorius Stedim, German) containing mineral salts medium (MSM) with carbon precursors (1,4-butanediol and 1,6-hexanediol in the 1:5 ratio). The fermentation was carried out at 30 °C with an agitation speed of 200 rpm, the aeration rate of 1 vvm and controlled pH of 7 for 108 h. Sampling was done at intervals of every 12 h. The composition of PHA produced was determined by gas chromatography (GC) using Shimadzu Gas Chromatography GC-2014 according to methods previously described [24 (link)]. Endotoxin removal was carried out on extracted P(3HB-co-95 mol% 4HB) copolymer as previously described. The extracted polymer was characterized based on the molecular weight using Shimadzu GPC-2014 and tensile test using tensile testing machine (GoTech Al-3000, Shimadzu, Japan) [24 (link)].
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