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4 protocols using β tubulin

1

Western Blot Analysis of Cell Signaling

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Cells or lung tissue were lysed in RIPA buffer (Beyotime) containing Na3VO4 (1 mM), protease inhibitor cocktail, and phosphatase inhibitor (phosSTOP, Roche), and the protein concentration was quantified by bicinchoninic acid assay (Beyotime). Equal amounts of protein were separated by SDS-PAGE, then transferred onto a nitrocellulose membrane (Pall Corp). The membranes were incubated at 4°C overnight with primary antibodies against Jag1 (Cell Signaling Technology), Shp2 (Cell Signaling Technology), pShp2 Y542 (Abcam), β-catenin (Abcam), active-β-catenin (Cell Signaling Technology), Col1α (Proteintech Group), α-SMA (Cell Signaling Technology), CD31 (Abcam), VE-cadherin (Ebioscience), Lamin-B1 (Proteintech Group), GAPDH (Daige), β-tubulin (Huabio), and β-actin (Huabio). The matched fluorescein-linked secondary antibodies (LI-COR Biosciences) were used to visualize proteins by incubation at room temperature for 1 h. The membranes were scanned with Odyssey (LI-COR Biosciences) and quantified by ImageJ.
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2

Aortic Valve Protein Extraction and Analysis

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Aortic valve leaflets were collected and stored at −80 °C. For protein extraction, after removing large calcified nodules, leaflets were minced and homogenized in cold RIPA buffer containing PMSF using a tissue grinder (Tissuelyser, Jingxin, Shanghai). Protein concentration was determined with the BCA protein assay (cat #A55860, Thermo Fisher). For western blotting, equal quantities of proteins were separated using 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to PVDF membranes. After blocking with skim milk, proteins were detected with specific primary antibodies followed by HRP-linked secondary antibodies. Finally, the blots were developed using the enhanced chemiluminescence reagent (cat #E411-04, Vazyme, Nanjing, China) with ImageQuant 800 (Amersham, GE healthcare); the bands were quantified by ImageQuant TL (Version 8.2, Amersham). The following primary antibodies were used at 1:1000 dilution otherwise specified: RUNX2 (cat #ET1612-47, Huabio, Hangzhou, China); ALP (cat #MAB1448, R&D); PAR2 (cat #ab180953, Abcam); PDK4 (cat #12949-1-AP, Proteintech); COL1A1 (cat #PA5-86949, Invitrogen); Fibronectin (cat #ab268020, Abcam); GPX4 (cat #ab125066, Abcam); GAPDH (cat #ET1702-66, Huabio, 1:5000); β-Actin (cat #ET1702-67, Huabio, 1:5000) and β-Tubulin (cat #ET1702-68, Huabio, 1:5000).
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3

TNBC Protein Extraction and Western Blot Analysis

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Cellular proteins were extracted from TNBC cells using RIPA lysis buffer containing 1 mM PMSF and a cocktail. Following extraction, the proteins underwent electrophoresis and were subsequently transferred to PVDF membranes. Then TBST-dissolved 5% skim milk powder was blocked for 2 h at room temperature; after blocking, the membranes were exposed to the relevant antibodies and incubated overnight at 4 °C, FTSJ1 (1:1000, abcam (Waltham, MA, USA), ab227259), β-tubulin (1:1500, Huabio (Beijing, China), M1305-2), GAPDH (1:1000, Cell Signaling Technology (Danvers, MA, USA), #5174). These membranes were then incubated with the corresponding secondary antibodies for 2 h at room temperature. An appropriate amount of ECL luminescence working solution (Adansta, San Jose, CA, USA) was uniformly added. Image Lab 6.0.1 software (Bio-Rad, Hercules, CA, USA) was used for scanning development, and the strip scan map was saved. The grayscale values of the blots were quantified using ImageJ 1.50i (USA).
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4

Profiling Protein Expression in CRC Cells

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CRC cells were collected and total proteins were extracted from CRC cells using RIPA lysis buffer. The total protein concentration was determined using the BCA method (P0011, Beyotime, Shanghai, China) reagent kit. The proteins were loaded onto a 10% SDS-PAGE gel for electrophoretic separation and transferred to a nitrocellulose membrane (Millipore, Billerica, MA, USA). The membrane was blocked with 5% skim milk and incubated with primary antibodies TSC22D2 (25418-1-AP, Protechin, Wuhan, China), ACOT8 (CSBPA000805, CUSAB, Wuhan, China), E-cadherin (#3195, Cell Signaling Technology, Beverly, MA, United States), N-Cadherin (#13116, Cell Signaling Technology), Vimentin (#5741, Cell Signaling Technology), β-tubulin (ER60054, HUABIO, Hangzhou, China) overnight at 4°C on a shaker. The membrane was then washed three times with TBST and incubated with secondary antibody (#7074 Cell Signaling Technology) at room temperature for 1 hour, followed by three washes with TBST, and visualized with ECL reagent (Millipore). Blots were imaged using the Amersham™ Imager 680 from GE Healthcare Life Sciences.
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