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7 protocols using si gas5

1

Silencing GAS5 and Inhibiting miR-21 in A549 Cells

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siRNA targeting GAS5 (si-GAS5) and siRNA negative control (si-NC) were synthesized by Shanghai GenePharma Co., Ltd. The si-GAS5 sense sequence was: 5′-UCUUCAAUCAUGAAUUCUGAG-3′ and the antisense sequence was: 5′-CAGAAUUCAUGAUUGAAGAAA-3′. The si-NC sense sequence was: 5′-UUCUCCGAACGUGUCACGUTT-3′ and the antisense sequence was: 5′-ACGUGACACGUUCGGAGAATT-3′ (16 (link)). miR-21 inhibitor and inhibitor negative control molecules (inhibitor-NC) were purchased from Guangzhou Ribobio Co., Ltd. The sequence of miR-21 inhibitor was 5′-UCAACAUCAGUCUGAUAAGCUA-3′ and the sequence of inhibitor-NC was 5′-CAGUACUUUUGUAGUACAA-3′. Briefly, 2×105 A549 cells in one well of a 6-well plate were transfected with 50 nM siRNA/si-NC or miR-21 inhibitor/inhibitor-NC mixed in 2 ml Opti-MEM plus 10% FBS using Lipofectamine 2000. Subsequently, 24 h after transfection, the cells were prepared for the subsequent experiments.
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2

Silencing GAS5 and Targeting miR-196a in Cancer Cells

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SiRNAs were designed against GAS5 (si-GAS5), scrambled controls (si-con), miR-196a, and anti-miR-196a by GenePharma (Suzhou, China). GAS5 was sub-cloned into pcDNA-3.1 (oe-GAS5) for overexpression studies. CAL27 and CAL27/DDP cells were transfected for 48 hours using Lipofectamine2000 (Thermo Fisher Scientific, Waltham, MA, USA) according to the manufacture’s protocol, and then subjected to functional experiments. Quantitative real-time PCR (qPCR) was used to assess transfection efficiency.
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3

Human Periodontal Ligament Stem Cell Transfection

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The siRNA control (si-NC) together with the small interfering RNAs (si-RNAs) against GAS5 (si-GAS5) and GDF5 (si-GDF5) were designed by Gene Pharma company (Shanghai, China). The si-RNA sequences were presented as following: si-GAS5, 5'-CUUGCCUGGACCAGCUUAATT-3'; si-GDF5, 5'-CCCAAGAAGGAUGAACCCATT-3'; si-NC, 5'-UUCUUCGAACGUGUCACGUTT-3'. When the cells have reached 70–80% of confluence, hPDLSCs were transfected by si-NC, si-GAS5 and si-GDF5 separately using Lipofectamine 3000 (Invitrogen) at 100 nM and Opti-MEM every four days following the manufacturer's instructions. Recombinant lentivirus containing full-length GAS5 (GAS5) and the control (NC) was designed by Gene Pharma company (Shanghai, China). The cells were cultivated with medium containing specific lentivirus for 24 h and then exposed to medium containing puromycin (10 ng/ml) for cell selection.
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4

Regulation of GAS5 by miR-23a in Lung Cancer

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miR-23a mimics (miR-23a), control mimics (miR-control), siRNA against GAS5 (si-GAS5), siRNA control (si-control), pcDNA-GAS5, and pcDNA empty control (pcDNA-control) were purchased from GenePharma (Shanghai, P.R. China). Cultured A549 and H157 cells were transfected with miR-23a, si-GAS5, pcDNA-GAS5, pcDNA-GAS5 + miR-23a, or their corresponding control at approximately 60%–70% confluence using Lipofectamine 2000 (Invitrogen). Transfection efficiency was checked by quantitative real-time polymerase chain reaction (qRT-PCR). Subsequent experiments were performed 48 h after transfection.
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5

Modulating GAS5 and miR-21 in Bladder Cancer Cells

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SV‐HUC‐1, HTB‐9, J82, UM‐UC‐3, and T24 cells (ATCC) were cultured in RPMI 1640 medium containing 10% fetal bovine serum.
The GAS5 coding sequences were subcloned into pcDNA3.1 (Genechem) to construct pcDNA expression vectors. GAS5 and siGAS5 (GenePharma) transfections were performed using Lipofectamine 2000 (Invitrogen), and the cells were harvested after 24 hours.
The miR‐21 mimic (RiboBio) and locked nucleic acid (LNA)‐anti‐miR‐21 (Exiqon) were used to upregulating or downregulating miR‐21 levels.
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6

Cholangiocarcinoma Cell Line Transfection

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CCA cell lines, including RBE, CCLP1, HuCCT1 and HCCC-9810 cholangiocarcinoma cell lines and a normal human intrahepatic biliary epithelial cell (HIBEC) line were purchased from ATCC. Cells were cultured in the atmosphere with 5% CO2 at 37 °C. The medium of cell culture is Dulbecco’s modified Eagle’s medium (DMEM) supplemented with 10% fetal bovine serum. si-GAS5 and hsa-miR-1297 inhibitor were purchased from GenePharma (Shanghai China). Lipofectamine 3000 reagent (Invitrogen, USA) was used for cell transfection. The transfection of cell with si-GAS5 and hsa-miR-1297 inhibitor were performed according to the manufacturer’s instructions. The PCR primers were miR-1297-forward: 5′-TCGGCAGGTTCAAGTAATT-3′; miR-1297-reverse: 5′-CTCAACTGGTGTCGTGGA-3′. The sequence of siRNA targeting GAS5 was 5′-UCUUCAAUCAUGAAUUCUGAG-3′. The negative control nontargeting sequence was 5′-ACGUGACACGUUCGGAGAATT-3′.
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7

Regulation of GAS5, CELF2 and VAV1

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Small interference RNAs (siRNAs) targeting GAS5 (si-GAS5) and the negative control si-NC, si-CELF2 and the negative control si-NC, si-VAV1 and the negative control si-con were designed and synthesized by GenePharma Co., Ltd. (Shanghai, China). GAS5 overexpression plasmid and its empty vector were purchased from Sangon Biotech Co., Ltd. (Shanghai, China). VAV1 overexpression plasmid and its mutated plasmid lacking CTGCTGCTG sequence were constructed by Sangon Biotech Co., Ltd.
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