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29 protocols using rhil 2

1

Human PBMC Isolation and Immune Cell Culture

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Human peripheral blood mononuclear cells (PBMC) were isolated from the blood using Ficoll Paque Plus (Sigma-Aldrich). The subtypes of MHC I molecules of Human PBMC were examined and HLA-A2+ human PBMC were identified by flow cytometry. Primary T cells were activated and expanded by culturing 1 × 106 PBMC in TexMACS medium (Miltenyi Biotec, Germany) supplemented with 500 IU/ml human recombinant Interleukin 2 (rhIL2) (Miltenyi Biotec), with 10 µl TransAct (Miltenyi Biotec) which contains anti-CD3 and CD28 antibodies, for 3 days. The T cells were then purified with a pan-T cell isolation kit (Miltenyi Biotec) and cultured in TexMACS medium + rhIL2 for 2 weeks before CD3/28 antibody re-stimulation or DC cell-based antigen stimulation. Primary NK cells were activated and expanded by culturing 1 × 106 PBMC in NK MACS medium (Miltenyi Biotec) supplemented with 5% human AB serum (Invitrogen) and 500 IU/ml rhIL2, with 5 × 105 microbeads conjugated with anti-CD335 and CD2 antibodies (Miltenyi Biotec) for 7 days. The NK cells were purified with NK cell isolation kit (Miltenyi Biotec) and cultured in NK MACS medium + human AB serum + rhIL2 for 1 week before hypoxic culture. The purity of the immune cells was examined by flow cytometry analysis.
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2

Cytotoxic Capacity of NK Cells

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The cytotoxic capacity of NK cells was assessed using the E-Cadherin expressing breast cancer epithelial cell line MCF-10A as target. Briefly, 20,000 MCF-10A cells were plated/well of a 96 flat-bottom plate 24 hours prior to the cytotoxicity assay. On the day of the assay, MCF-10A cells were labeled with Calcein-AM (Sigma-Aldrich) at 10μM for 1 hour before co-culture with NK cells in complete medium containing 500 IU/ml rhIL-2 (Miltenyi Biotech) and as described elsewhere (34 (link)). NK cells transfected with siRNA specific for KLRG1 or scrambled control siRNA for 36 hours were pre-treated with the AMPK agonist A769662 (Tocris Bioscience) at 150 μM or equivalent DMSO as negative control for 2 hours before being added to the target cells. Effector and target cells were combined at a ratio of 40:1 in triplicate and cultured in complete medium containing 500 IU/ml rhIL-2 (Miltenyi Biotech) for 4 hours. After 4 hours of co-culture fluorescence was measured in 75 μl of cell culture supernatant using a Spectramax Gemini spectrofluorimeter. Specific lysis was calculated as % killing = (test release–spontaneous release) / (max release–spontaneous release) x 100.
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3

Expansion of Antigen-Specific T Cell Clones

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Retrovirally transduced T cells were produced and expanded as previously described (11 (link)). Briefly, after isolation, PBMCs were stimulated with 600 IU/mL of recombinant human interleukin-2 (rhIL-2; Miltenyi Biotec, 130-097-745) and 50 ng/mL of anti-CD3 (eBioscience, 16-0037-81) in AIM-V (ThermoFisher Scientific, 12055091), 2% (v/v) human AB serum (Sigma-Aldrich, H6914) for 48 h, before transduction with a MP-71 vector containing the Vα34 and Vβ3 chains of the HBs183-91-specific (Ts) or the HBcore18-27-specific (Tc) TCR sequences. Bulk transduced T cells were expanded and restimulated using 0.5–1 × 106 TCR-transduced T cells, 2 × 105 irradiated (2,500 rads) T2 cells pulsed with 1 µg/mL of either HBs183-91 peptide (FLLTRILTI) or HBcore18-27 (FLPSDFFPSV) (Genscript, custom synthesized peptides) and 1.8 × 106 irradiated PBMCs as feeders. Cells were cultured for about 2 weeks in AIM-V, 2% human AB serum supplemented with 100 IU/mL of rhIL-2, 10 ng/mL of rhIL-7 (Miltenyi Biotec, 130-095-362), and 10 ng/mL of rhIL-15 (Miltenyi Biotec, 130-095-764). In some experiments, CD8+ T cells were enriched through negative selection of transduced T cells using CD4 microbeads (Miltenyi Biotec, 130-045-101) following the manufacturer’s instructions.
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Expansion of HIV/EBV-specific CD8+ T cells

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Thawed PBMCs from HIV-infected individuals were labeled with CellTrace Violet (Thermo Fisher Scientific) at 1μM according to the manufacturer's protocol. The cells were then plated at 5 × 106 cells/well in 24 well plate in CellGenix GMP DC Medium (CellGenix) containing recombinant human (rh) IL-7 (1ng/ml, PeproTech) to support minimal T cell survival and rh FLT3L (50ng/ml, PeproTech) to mobilize primary DCs. After 24 hours (day 1), cognate CD8 epitope peptides from HIV or EBV were added to the culture at 1μg/ml. On day 2, human serum (Access Biologicals) and rh IL-2 (Miltenyi Biotec) were added at final concentrations of 8% (volume/volume) and 20U/ml, respectively. Half of the medium was replaced with RPMI-1640 containing 8% human serum, rhIL-2 (20U/ml), and penicillin-streptomycin (100 U/ml, Quality Biological) on days 5, 7 and 9. HIV and EBV-specific CD8+ T cells in the culture were analyzed by flow cytometry on days 6 and 12.
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5

Electroporation-Mediated siRNA Knockdown in Freshly Isolated KLRG1+ NK Cells

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siRNA was introduced into freshly isolated KLRG1bright NK cells by electroporation using the Amaxa® Human NK Cell Nucleofector® Kit and Nucleofector® technology (Lonza) according to the manufacturer’s instructions. Briefly, 3x106 freshly isolated KLRG1bright NK cells were resolved in Nucleofector® solution provided by the manufacturer and 200 nmol PP2C (PP2Cα siRNA, sc-42937, Santa Cruz Biotechnology) or 300 nmol KLRG1 siRNA (KLRG1 siRNA, sc-42937, Santa Cruz Biotechnology). Nucleofection was performed with the Nucleofector™ I Device Program U-01 (Lonza). Cells were then transferred into 12-well cell culture plates containing pre-equilibrated complete medium and incubated for 36 hours. NK cells transfected with KLRG1 siRNA were cultured in complete medium containing 500 IU/ml rhIL-2 (Miltenyi Biotech). Knock-down efficiency of KLRG1 siRNA was monitored by measuring cell surface expression of KLRG1 by flow cytometry (Fig. S3A). Knock-down of PP2Cα was confirmed by immunoblot analysis (rabbit-anti-PP2Cα mAb, clone D18C10, XP, from Cell Signaling Technology) (Fig. S3B). In all experiments a scrambled control siRNA (sc-37007, Santa Cruz Biotechnology) was used.
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6

In Vitro 3D Microfluidic Liver Co-Culture Model

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Collagen hydrogels with 2 × 106 HepG2-PreS1-GFP or Hep3B-GFP cells/mL were prepared as previously described23 (link) and injected into dedicated 3D regions of a commercially available microfluidic AIM Chip (AIM Biotech). The hydrogel was polymerized by thermal cross-linking at 37 °C for 30 min. Subsequently, media channels in the hydrogel were hydrated with R10 medium and incubated for 24 h to permit interaction between HepG2-PreS1-GFP and the hydrogel microenvironment. The medium in the microfluidic device was then replaced with AIM-V medium supplemented with 2% human AB serum, 100 IU/mL rhIL-2, and 3 μM DRAQ7 (Miltenyi Biotec) in preparation for the first confocal imaging. 9 × 104 Electroporated HBV S183 antigen-redirected T cells or 6 × 104 NK cells labeled with 3 μM CellTracker Violet BMQC (Invitrogen) were added to one channel of the device and incubated for 24 h before the next confocal image acquisition. For devices containing Hep3B-GFP cells, 9 × 104 CD133 CAR-T cells were added per device without the need for labeling as they are also expressing mCherry.
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Engineered Cell Lines for Research

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HEK293T (ATCC) and MV4-11 (ATCC) were cultured in media per the supplier’s recommendation. Expi293 (Thermo Fisher Scientific) was cultured in media per the supplier’s recommendation. U87-EGFR is a kind gift from Cellectis SA (Paris, France). U87-EGFR was derived from the parental cell line, U87MG (ATCC) by first knocking out endogenous EGFR using Transcription Activator-Like Effector Nucleases (TALEN), and then stably overexpressing full-length human EGFR via lentiviral transduction. X-VIVOTM 15 was obtained from Lonza, rhIL-2 from Miltenyi Biotech, human serum AB from Seralab, human T-activator CD3/CD28 from Thermo Fisher Scientific, MACS® LD-column from Miltenyi Biotech, Hyclone FBS from GE Healthcare Life Sciences, Ficoll-Paque PLUS from GE Healthcare Life Sciences and Pan T cell Isolation Kit, human from Miltenyi Biotech. Methotrexate disodium salt and leucovorin calcium were obtained from Alfa Aesar and Sigma, respectively.
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8

Expansion of SARS-CoV-2-specific T Cells

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SARS-CoV-2-specific T cells enriched via CCS using the CliniMACS Prodigy device and MACS GMP PepTivator SARS-CoV-2 Select (Miltenyi Biotec) were seeded into 24 well plates at 1 × 105 cells per well in TexMACS (Miltenyi Biotec). For feeder cells, autologous PBMCs were irradiated at 50 Gy and seeded at 1 × 107 cells per well. Cultures were supplemented with recombinant human Interleukin-2 (rhIL-2, 50 IU/ml; Miltenyi Biotec) and maintained for 7–13 days including regular media change and splitting of the cells.
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9

Expansion of Autologous Vδ2 T Cells

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PBMCs from ALL patients and HV (healthy volunteers) were isolated by density gradient (Lymphoprep) and were then frozen until use. To expand autologous Vδ2 T cells, frozen PBMCs from ALL patients were stimulated with ZOL 1µM (Sigma-Aldrich, Saint Louis, MO) and rhIL-2 (Miltenyi Biotec, Bergisch Gladbach, Germany) at day 0. From day (d) 5, rhIL-2 was renewed every 2 days and the cells were maintained at 1.5 × 106/mL until d14. rhIL-15 (10 ng/mL; Miltenyi Biotec) was also added starting at d2 and was renewed every 2 days, as IL-15 has been shown to enhance the proliferative capacity of Vδ2 T cells [55 (link),56 (link),57 (link)]. Fresh autologous expanded Vδ2 T cells were then used for functional assays, depending on the quantity of Vδ2 T cells. The fold increase in viable Vδ2 T cells was calculated using the formula: (d14 %Vδ2 × d14 total cell number/(d0 % Vδ2 × d0 total cell number).
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10

Isolation and Stimulation of Primary Immune Cells

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Peripheral blood mononuclear cells (PBMCs) were obtained using Ficoll-Hypaque density gradient centrifugation. CD4+ and CD8+ T cells were purified by negative selection (Miltenyi Biotec) and stimulated with human CD3/CD28/CD2 antibody-coated beads (Miltenyi Biotec) at 1:1 bead-to-cell ratio, in the presence of 50 IU/ml of rhIL-2 (Miltenyi Biotec) for three days. CD19+ B cells were purified by positive selection (Miltenyi Biotec) and stimulated with 8 IU/ml of CD40L (Miltenyi Biotec) in the presence of 50 IU/ml of IL-4 (Miltenyi Biotec) for three days. CD14+ monocytes were purified by positive selection (Miltenyi Biotec) and stimulated with 100 ng/ml of LPS (eBioscience) and 500 ng/ml of R848 (InvivoGen) for three days. Primary cells were maintained in RPMI 1640 medium (Corning) supplemented with 10% FBS, 100 U/ml of penicillin, 100 μg/ml of streptomycin, and 2 mM of L-glutamine at 37°C/5% CO2.
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