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Epoxy embedding medium

Manufactured by Merck Group
Sourced in United States, Germany

Epoxy embedding medium is a specialized laboratory product used in the preparation of samples for microscopic analysis. It serves as a support matrix to embed and stabilize specimens, enabling thin sectioning and preservation of their structure and integrity. The medium provides a stable and inert environment for the encapsulation of samples prior to further processing and examination.

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21 protocols using epoxy embedding medium

1

Ultrastructural Analysis of HBMVECs under Ischemia-Reperfusion Injury

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HBMVECs undergoing OGD/R and/or treatment with apigenin were fixed with 2.5% glutaraldehyde, and then fixed again with 1% osmium tetroxide (Sigma-Aldrich, MO, USA) for 30 minutes, followed by dehydration via acetone at room temperature, embedding via epoxy-embedding medium (Sigma-Aldrich, MO, USA), and ultrathin sections of 1 μm were made and then stained by uranyl acetate (Tianfu Chemical Co. Ltd., China). Subsequently, the FEI Tecnai G2 Spirit transmission electron microscope (FEI, Netherlands) was used to observe the photograph.
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2

Ultrastructural Analysis of NP Cells

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NP cells were fixed with 1% glutaraldehyde for 2 hours and 1% osmic acid for 20 minutes at 4°C. The cells were then dehydrated by acetone gradient, embedded with epoxy embedding medium (Sigma‐Aldrich, USA). Ultrathin sections were cut, stained with 4% uranium acetate and lead citrate and observed under a transmission electron microscope (TEM) (Jeol JEM‐1230, Japan).
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3

Placental Ultrastructure Analysis by TEM

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For transmission electron microscopy (TEM), samples of the placenta were fixed overnight in 2.5% glutaraldehyde (Merck Millipore, Billerica, MA, EUA), buffered with 0.1 M Sodium Cacodylate buffer (Na(CH3)2 AsO2 • 3H2O, pH 7.4), and post-fixed in 1% osmium tetroxide (OsO4), (Merck Millipore) for 3 hours. After dehydration in acetone (Sigma-Aldrich), tissues were embedded in Epoxy embedding medium (Sigma-Aldrich) for 48 hours at 70 °C. Ultra-thin sections of 70 nm were stained with 0.5% uranyl acetate and 8% lead citrate and examined using a Tecnai FEI G20 transmission electron microscope (FEI, Hillsboro, Oregon, USA).
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4

Ultrastructural Changes in HCECs after MXF Exposure

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The HCECs’ ultrastructural change, after MXF exposure, was investigated by transmission electron microscopy (TEM). The HCECs were treated with various concentrations of MXF (0, 0.25, 0.5, and 1.0 mg/ml) for 48 h, and then the cells were fixed in 3.7% paraformaldehyde (Sigma–Aldrich, St. Louis, MO, USA) and 2.5% glutaraldehyde (Sigma–Aldrich) in 0.1 M phosphate buffer (PB; pH 7.6) overnight. After washing in 0.1 M PB, the HCECs were fixed in 1% of osmium tetroxide in the same buffer for 1 h. Following the dehydration of the cells with a series of graded EtOH (Merck, Kenilworth, NJ, USA), HCECs were embedded in an epoxy embedding medium (Sigma–Aldrich). Then, polymerization was performed at 60 °C for three days. The ultrathin Sects. (60–70 nm) of the samples were obtained and examined under TEM (JEM-1010; JEOL, Tokyo, Japan), operating at 60 kV. The images were recorded by a charge-coupled device camera (SC1000; Gatan, Warrendale, PA, USA). The length of the electron micrograph was measured using the GMS software (Gatan).
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5

Ultrastructural Analysis of Cells

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For ultrastructural analysis, cells were plated in a Chamber Slide™ system and fixed in 0.5% glutaraldehyde and 2% paraformaldehyde, 0.1 M cacodylate buffer, pH 7.4 for 1 h, then post fixed in 1% osmium tetroxide in the same buffer for 45 min, in the dark. Samples were washed for 30 min and contrasted en bloc with 1% uranyl acetate in the dark, then gradually dehydrated in ethanol. All the steps of the above procedure were performed at 4°C. Cells were infiltrated with a mixture of ethanol and Epoxy Embedding Medium (Sigma-Aldrich™, Cat# 45359-1EA-F), then embedded in the same resin, allowing specimens to polymerize at 60°C, for 3 days. Resin-embedded cells were mounted on stubs using a self-adhesive carbon disk and gold sputtered by an Emithech K550. Regions of interest were cross-sectioned by the focused gallium ion beam of the Dualbeam FIB/SEM (Helios Nanolab, FEI, Hillsboro, OR, USA). Images of cross sections were acquired at a working distance of 2 mm using backscattered electrons and a through-the-lens detector in immersion mode with an operating voltage of 2 kV and an applied current of 0.17 Na. Images were composed in an Adobe Photoshop CS6 format.
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6

Ultrastructural Analysis of Mast Cells

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Preparation of mast cell samples for ultrastructural examination by TEM was performed as described previously (54 (link)). Briefly, isolated peritoneal cells of wild-type and TPC1-deficient animals were resuspended in phosphate buffer (100 mM PO4, pH 7.2) containing 2.5% glutaraldehyde, and then fixed for 4 h at RT. Fixed cells were subsequently collected, rinsed several times in phosphate buffer only (10 min at 200 rcf), and then postfixed in 1% osmium tetroxide (in H2O) for 1.5 h at 4 °C. Afterward, samples were dehydrated in an ascending acetone series and embedded in epoxy embedding medium (Sigma-Aldrich). Ultrathin sections contrasted with methylene blue were examined using a Zeiss transmission electron microscope (EM902A). Morphological analyses were performed for 21 wild-type and TPC1-deficient mast cells (four individuals per genotype) using the Image J software (https://imagej.net/Welcome).
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7

Ultrastructural Analysis of Autophagy

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After OGD/R and treatment, HBMVECs were fixed using 2.5% glutaraldehyde and then 1% osmium tetroxide (Sigma-Aldrich, USA) for 30 minutes. Dehydration via acetone and embedding via epoxy embedding medium (Sigma-Aldrich, USA) were performed at room temperature. 1 μm ultrathin sections were made and stained by uranyl acetate (Tianfu Chemical Co. Ltd, China). Autophagy was observed by transmission electron microscopy (FEI, Netherlands).
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8

Preparation of Ultrathin Sections for TEM

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Preparation of ultrathin sections was performed following standard procedure previously published27 (link). In brief: Cleared specimens and unfixed control tissue were postfixed in 1% (wt/v) OsO4 in PBS, and then dehydrated in an ethanol series (50%, 70%, 96%, 100%). The 70% alcohol was saturated with uranyl acetate for contrast enhancement. Dehydration was completed by acetone, followed by propylene oxide. Specimens were infiltrated with rising concentrations of Epoxy embedding medium (Sigma Aldrich, Darmstadt, Germany). Ultrathin sections (60 nm) were cut on a Leica Ultramicrotome (Leica, Bensheim, Germany) and mounted on pioloform-coated copper grids. Ultrathin sections were examined and documented using a LEO 912AB transmission electron microscope (Carl Zeiss, Oberkochen, Germany).
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9

Morphological EM of Drosophila Tissue

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For morphological EM of Drosophila tissue, samples were prepared as previously described.79 (link) Briefly, samples were fixed with 1% glutaraldehyde for 1 h and then with 1% reduced OsO4 for 1 h and embedded into Epoxy embedding medium (Sigma, 45359) or gelatin type A (Sigma, G8150). Then, constantly checking the position of the section plane with the help of stained semi-thin sections Epon or cryo-sections were prepared. Cryo-sections were then labeled with rabbit anti-ref(2)P antibody 1:100 or with rat anti-Atg8a antibody 1:40. The primary antibody was marked with 10 nm gold (a gift from G. Posthuma, University Medical Center, Utrecht, The Netherlands).
The analysis of chemically fixed samples by electron tomography was performed on 200-nm-thick sections, as described previously.79 (link) Briefly, samples were tilted from +65° to –65° at 1° intervals, with a magnification of 26,500x or 40,000x. At least 5 tomograms were analyzed per each experimental condition.
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10

Transmission Electron Microscopy of Nanoparticles in HCECs

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The distribution of SiMAG or fluidMAG in HCECs was investigated using a transmission electron microscope (TEM), as previously described.19 (link) HCECs were treated with SiMAG or fluidMAG (20 µg/mL) for 24 hours. Cells were fixed overnight with 2.5% glutaraldehyde (Sigma-Aldrich) and 3.7% paraformaldehyde (Sigma-Aldrich) in 0.1 M phosphate buffer (pH 7.6). After washing with 0.1 M phosphate buffer, HCECs were fixed with 1% osmium tetroxide (OsO4) in the same buffer for 1 hour. Cells were then dehydrated with a graded ethanol series (Merck KGaA, Darmstadt, Germany) before embedding in an epoxy embedding medium (Sigma-Aldrich). Polymerization was then performed at 60°C for 3 days. Ultrathin sections (60–70 nm) of samples were obtained with an ultramicrotome (Leica Ultracut UCT, Leica, Germany). Sections were collected on a grid (200 mesh) and examined using TEM (JEM-1010; JEOL, Tokyo, Japan) at 60 kV. Images were recorded with a charge-coupled device camera (SC1000; Gatan, Warrendale, PA). The length of the electron micrograph was measured with the Gatan Microscopy Suite software (Gatan, Warrendale, PA). Normal control for TEM was incubated in a complete nanoparticle-free medium for 24 hours.
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