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78 protocols using methanol d4

1

NMR Characterization of Purified Glucoside

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Thirty-five mg of purified glucoside was solved in 200 µL methanol-d4 (Sigma-Aldrich, Steinheim, Germany), centrifuged at maximum speed for 2 min and evaporated. The residue was solved in 400 µL methanol-d4 (Sigma-Aldrich, Steinheim, Germany), transferred to an NMR tube and filled up to a final volume of 600 µL. NMR spectra were recorded with a Bruker DRX 500 spectrometer (Bruker, Karlsruhe, Germany). The chemical shifts were referred to the solvent signal. The one-dimensional and two-dimensional COSY, HMQC and HMBC spectra were acquired and processed with standard Bruker software (XWIN-NMR) and MestreNova software (mestrelab.com; accessed on 8 September 2021).
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2

NMR Spectroscopy Analysis of Glucosides

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Thirty mg purified glucoside or 15 mg aglycone were solved in 200 µl methanol-d4 (Sigma-Aldrich, Steinheim, Germany), centrifuged at maximum speed for 2 min und evaporated. The residue was solved in 400 µl methanol-d4 containing 0.03% (v/v) TMS (Sigma-Aldrich, Steinheim, Germany), transferred to a treated NMR tube und filled up to a final volume of 600 µl. NMR spectra were recorded with a Bruker DRX 500 spectrometer (Bruker, Karlsruhe, Germany). The chemical shifts were referred to the solvent signal. The one-dimensional and two-dimensional COSY, HMQC, and HMBC spectra were acquired and processed with standard Bruker software (XWIN-NMR) and MestreNova software (mestrelab.com).
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3

Extraction and Characterization of Bacterial Endotoxin

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All solvents used for the extraction and chromatographic procedures were of HPLC-grade quality and purchased from the Hazardous. Materials Facility (HMF) in Trinity College Dublin (Dublin, Ireland). Deionized water was obtained from a Millipore™ water deionizing system. Sephadex® LH-20 was purchased from Sigma-Aldrich (Arklow, Ireland). The solvents employed for Nuclear Magnetic Resonance (NMR) analysis included Methanol-D4 (≥99.8% purity) and Dimethyl Sulfoxide-D6 (DMSO, 99.9% purity) from Sigma-Aldrich (Arklow, Ireland). Lipopolysaccharide (LPS) from Escherichia coli 0111: B4 (L4391), fetal bovine serum (FBS, F7524), and Dulbecco’s modified Eagle’s medium (DMEM, D0822) were also sourced from Sigma-Aldrich (Arklow, Ireland). The Cell Counting Kit-8 (CCK-8) was obtained from Dojindo, and dexamethasone was acquired from Sigma-Aldrich (CAS No. 50–02–2).
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4

Analytical Techniques for Natural Product Characterization

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An Atago AP-300 digital polarimeter with a 1 dm microcell and a sodium lamp (589 nm) was used to obtain optical rotations. A Bruker DRX-600 NMR spectrometer (Bruker BioSpin GmBH, Rheinstetten, Germany) equipped with a Bruker 5 mm TCI at 300 K was employed to run NMR data. Data processing was carried out with Topspin 3.2 software. All 2D NMR spectra were acquired in methanol-d4 (99.95%, Sigma-Aldrich, Milano, Italy), and standard pulse sequences and phase cycling were used for COSY, HSQC, HMBC, 1D-TOCSY, and ROESY spectra. HRESIMS data were obtained in the positive ion mode on a Q Exactive Plus mass spectrometer, an Orbitrap-based FT-MS system, equipped with an ESI source (Thermo Fischer Scientific Inc., Bremen, Germany). Column chromatography was performed over silica gel (70–220 mesh, Merck). A Shimadzu LC-8A series pumping system equipped with a Shimadzu RID-10A refractive index detector and Shimadzu injector (Shimadzu Corporation, Kyoto, Japan) on a Waters XTerra Semiprep MS C18 column (300 mm × 7.8 mm i.d.) and a mobile phase consisting of a MeOH-H2O mixture at a flow rate of 2.0 mL/min were employed to purify the molecules. TLC was performed on silica gel 60 F254 (0.20 mm thickness) plates (Merck, Darmstadt, Germany) as a spray reagent, and Ce(SO4)2/H2SO4 (Sigma-Aldrich, Milano, Italy) was used [60 (link)].
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5

Deuterated Compound Synthesis via Patented Process

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Example 13

[Figure (not displayed)]
The title compound was prepared as described for PY62 in U.S. Pat. No. 9,187,446, but using deuterated methanol (methanol-d4, 99.8 atom % D; Sigma-Aldrich) in place of methanol in the last step of the synthesis. Yield: 2.2 mg (30%). 1H NMR (500 MHz, CDCl3): δ 6.82 (d, 1H), 6.51-6.43 (broad t, 1 H), 6.25-6.17 (broad d, 1 H), 5.96 (s, 1 H), 4.99-4.88 (m, 1 H), 2.60 (m, 1 H), 2.40 (t, 2 H), 2.25 (m, 2 H),2.01 (s, 3 H), 1.86 (s, 3 H), 1.80 (m, 1 H), 1.60 (m, 1 H), 1.25 (d, 3 H). MS (MALDI): calculated: m/z 475.20 (MH+); found: 475.13.

[Figure (not displayed)]

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6

Phosphatase Assay with Recombinant PTP1B

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p-Nitrophenyl phosphate (pNPP), dimethyl sulfoxide (DMSO), sodium phosphate monobasic dihydrate, sodium phosphate dibasic, sodium hydroxide, sodium azide, tris-(hydroxymethyl)-aminomethane (Tris), bis-(2-hydroxyethyl)-imino-tris-(hydroxymethylmethane) (Bis-Tris), N,N,N′,N′-ethylenediaminetetraacetate (EDTA), dithiothreitol (DTT), methanol-d4, and HPLC grade acetonitrile were purchased from Sigma-Aldrich (St. Louis, MO, USA), recombinant human PTP1B (BML-SE332-0050, EC 3.1.3.48) was purchased from Enzo Life Sciences Inc. (Farmingdale, NY, USA), and formic acid was purchased from Merck (Darmstadt, Germany). Water was purified by deionization and filtration through a 0.22 μm membrane (Millipore, Billerica, MA, USA).
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7

Lipid Peroxidation Inhibition Assay

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Methanol-d4, tetramethylsilane, quercetin, linoleic acid, soybean 15-lipoxygenase (15-LO), hypoxanthine, xanthine oxidase (XO) from bovine milk, acarbose, 22-S-hydroxycholesterol (22-SHC), 4-nitrophenyl α-d-glucopyranoside (PNP-G), 2-chloro-4-nitrophenyl-α-d-maltotrioside (CNPG3), quercetin and gallic acid were from Sigma-Aldrich (St. Louis, MO, USA), Folin Ciocalteu reagent was from Merck (Darmstadt, Germany). Dulbecco‘s modified Eagle’s medium (DMEM-Glutamax™, 5.5 mM), DMEM, fetal bovine serum, Ultroser G, penicillin–streptomycin–amphotericin B and trypsin-EDTA were obtained from Gibco Life Technologies (Paisley, UK). d-[14C(U)]glucose (1 μCi/mL, 100 μM) was purchased from ARC (American Radiolabeled Chemicals, St. Louis, MO, USA). Corning CellBIND tissue culture plates were obtained from Corning Life-Sciences (Amsterdam, The Netherlands). The protein assay reagent was obtained from BioRad (Copenhagen, Denmark). All other reagents were of the highest purity available. All solvents were of analytical grade and water was purified by a MilliQ system (Millipore, Bedford, MA, USA).
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8

Quantification of Organic Compounds

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All the high purity organic solvents were purchased from Merk. Certified reference materials of ethyl paraben (GBW(E) 100064) with a certificate value of 99.7% as an internal standard for qNMR measurement and chloramphenicol (GBW(E)060907) with a certificate value of 99.8% were supplied by National Institute of Metrology (NIM), China. Methanol-D4 was obtained from Sigma-Aldrich. The powder of chloramphenicol material with a labeled purity of 99.8% was purchased from Tokyo Chemical Industry (TCI) Co., Ltd., Japan.
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9

Extraction and Quantification of Fomentariol

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Ethanol (99.5%) used for the extraction of fomentariol was obtained from Sigma-Aldrich Chemie GmbH (Taufkirchen, Germany), while dichloromethane (99.8%) was obtained from Honeywell Riedel-de Haën (Seelze, Germany). Acetonitrile (99.8%) and formic acid (98%) were also purchased from Sigma-Aldrich Chemie GmbH, as well as mEthanol-d4 (99.9%). Toluene (99.5%) obtained from POCH (Gliwice, Poland) was used for quantitative NMR determination. Purified water was obtained from a Simplicity 185 purification system (Millipore, Billerica, MA, USA). Before use, the sample was filtered through 0.22 µm nylon membranes (Agilent Technologies, Santa Clara, USA). All reagents used were of analytical grade except water and Acetonitrile, which were of HPLC grade.
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10

Characterization of Compound 11

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Optical rotation of compound 11 was measured on an Autopol IV (Rudolph Research Analytical, Hackettstown, NJ, USA) polarimeter. IR measurements were carried out on a Bruker IFS-48 spectrometer. UV spectra were obtained on a Beckman DU 670 spectrometer. NMR experiments were acquired in methanol-d4 (99.95%, Sigma-Aldrich, Milan, Italy) on a Bruker DRX-600 spectrometer (Bruker BioSpin GmBH, Rheinstetten, Germany), equipped with a Bruker 5 mm TCI CryoProbe at 300 K. Data processing was carried out with Topspin 3.2 software (Bruker BioSpin, Rheinstetten, Germany). The ROESY spectra were acquired with tmix = 400 ms. Size exclusion chromatography was performed using Sephadex LH-20 (GE Healthcare, Sigma Aldrich, Milan, Italy).
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