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30 protocols using permount solution

1

Cell Morphology Evaluation of Leukemia Cells

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After the appropriate time of Ro treatment (or DMSO in controls) in culture, 1.5 × 105 MLL-AF9 BM or human leukemia cells (K562 and MOLM13) were washed once with 1× PBS, counted and centrifuged onto slides for 5 minutes at 35 × g and air-dried for 24 h prior to Richard-Allan Scientific Three-Step Stain Staining Set (Thermo Scientific) based on Eosin Y and Methylene Blue/ Azure A and mounted with Permount solution (Fisher). Cell morphology was evaluated by light microscopy at ×400 magnification (Zeiss Imager M-2 equipped with AxioCam ERc 5 s).
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2

Paraffin-Embedded Immunohistochemistry Protocol

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Tissues/cells were fixed in 10% buffered formalin, embedded in paraffin and sectioned using a microtome and mounted onto glass slides. The slides were incubated at 60 C for an hour to melt the paraffin, followed by dehydrating them through gradients of ethanol (70, 80, 90% and 100%) and 100% xylene. The samples were then treated with antigen unmasking solution (Dako pharma) followed by permeabilization with 0.3% H2O2 and blocked using blocking buffer (5% donkey serum and 2% BSA). Samples were then incubated overnight in the primary antibody prepared in the blocking buffer followed an incubation with appropriate HRP conjugated secondary antibody. Color development was achieved by treating the samples with diaminobenzidine (DAB) and counterstaining performed using harris hematoxylene (Dako pharma). The samples were then passaged through alcohol grades and xylene to dehydrate them, mounted using permount solution (fisher scientific) and allowed to dry overnight before the image analysis.
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3

Senescence Assay in Growth Plate

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To assess cellular senescence in the growth plate, freshly dissected growth plates were embedded in OCT and snap-frozen on dry ice and maintained at −20 °C. Frozen sections of growth plate were immediately prepared, fixed for 1 minute in 5% formalin, and incubated overnight at 37  °C in 1 mg/ml of X-gal (5-bromo-4-chloro-3-indolyl β-D-galactopyranoside; Invitrogen), 5 mM K3Fe(CN)6 (Sigma-Aldrich), 5 mM K4Fe(CN)6×3H2O (Sigma), and 40 mM citric acid/sodium phosphate (pH 6.0) as previously described [41 (link)]. The reaction was stopped by washing the slides in PBS (pH 7.4) and fixing in 10% formalin, followed by counterstaining with 0.1% nuclear fast red solution (Sigma), dehydrating in serial ethanol solutions (70%, 85%, and 100%, 5 minutes each), immersing in xylene, and mounting using Permount solution (Fisher Scientific).
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4

NADPH-d Staining of Rat Brain

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After the behavioral testing was completed, then rats were perfused 1X PBS perfusate containing heparin, followed by 800 ml of 4% paraformaldehyde in 0.1 M PBS. The brains were placed fixed brain in 20% sucrose solution and incubate at 4 °C overnight. The brains were cut through the midline with a fresh blade at the level of the PVN. Brain tissue were incubated for 30 min in 0.1 mg/ml nitroblue tetrazolium (Sigma, MO, USA) and 0.1 mg/ml β-nicotinamide adenine dinucleotide phosphate (NADPH) (Sigma, MO, USA) in 0.05 M PBST at 37 °C. And then, the sections were rinsed three times (10 min each) in 0.05 M PBS. The slides were air-dried and then coverslipped with Permount™ solution (Fisher Scientific, CA, USA). The number of NADPH-d positive cells were measured from areas of 200 um2 according to the atlas of Paxinos and Watson [30 (link)] under the light microscope (DP-20, Olympus, CA, USA).
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5

Histological Analysis of Endometrial Tissues

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All endometrial and caruncle tissues were collected and fixed in 70% diethyl pyrocarbonate (DEPC) ethanol, dehydrated, paraffin-embedded, and sectioned at 10 µm thickness. Representative sections of each endometrial and caruncle tissue paraffin block from all treatment groups were randomly selected and stained with hematoxylin and eosin (H&E; Sigma-Aldrich, St. Louis, MO, USA). The tissues were dehydrated, cleared, covered with Permount solution (Fisher Scientific, NJ, USA), and subjected to histological examination, using an optical microscope.
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6

Immunohistochemistry for Matrix Metalloproteinases

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Immunohistochemical detection of MMPs and TIMPs was carried out on 5 μm tissue sections mounted on siliconized slides. Briefly, paraffin sections were dewaxed with xylene substitute (Polysciences, PA, USA) and rehydrated in a graded series of ethanol. Antigen retrieval was performed by heating at 95 °C in 10 mM sodium citrate (pH 6.0). Endogenous peroxidases were quenched with 0.3 % H2O2 in methanol for 5 min at room temperature. After 3 washes in PBS, the slides were incubated in a blocking buffer containing 1 % (v/v) goat serum and 3 % (v/v) horse serum in PBS for 1 h at room temperature. Sections were incubated overnight at 4 °C with antibodies (diluted 1:150 in blocking buffer) against MMP-2 (Abcam), MMP-9 (Santa Cruz), TIMP-2, and TIMP-3. Sections were washed in PBS and incubated with secondary anti-rabbit, (Santa Cruz), anti-mouse (Santa Cruz), anti-goat, or anti-FITC HRP-conjugated (Takara, Osaka, Japan) antibodies (diluted 1:300 in blocking buffer) for 1 h at room temperature, rinsed, and developed for 10 min using the ABC detection kit (Vector, CA, USA); diaminobenzidine (Vector) was used as a substrate for HRP. Sections were counterstained with periodic acid–Schiff reagent and Harris hematoxylin solution containing 4 % (v/v) acetic acid. Tissues were dehydrated, cleared, and covered with Permount solution (Fisher, NJ, USA).
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7

Histological Verification of Electrode Placement

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Final placement of the electrodes was monitored online based on implantation depth and verified histologically at the end of the experiments. Rats were anesthetized with isoflurane and transcardially perfused with 0.9% sodium chloride, followed by 4% formaldehyde. The harvested brains were postfixed for 24 h and immersed in 20% sucrose for 2 days. Coronal cryostat sections (40-μm thickness) were mounted with permount solution (Fisher Scientific) on superfrosted coated slides (Fisher Scientific). Images of a whole section were taken by a HP scanner, and microscope images were taken by a Zeiss microscope.
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8

H&E Staining of Fish Trunk Tissue

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H&E staining was performed as previously described (Heim et al., 2014 (link)). Briefly, fish were euthanized, their trunks were dissected, fixed overnight in 4% paraformaldehyde at 4°C, washed in PBS, and fixed in 100% methanol for at least 1 day. Trunks were decalcified in Immunocal solution (Decal Chemical Corp) overnight at room temperature. After paraffin embedding and sectioning onto slides, tissue was deparaffinized, stained with H&E, coated with Permount solution (Fisher Scientific), coverslipped, and imaged using an AxioSkop2 microscope and AxioCam CCD camera.
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9

Tissue Histology via H&E Staining

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Haematoxylin and Eosin (H&E) staining was performed as previously described (Heim et al., 2014). Briefly, tissue was fixed in 4% paraformaldehyde overnight at 4°C, dehydrated in MeOH, and placed at—20°C. After paraffin embedding and sectioning onto slides, tissue was deparaffinized, stained with H&E, coated with Permount solution (Fisher Scientific), coverslipped, and imaged using an AxioSkop2 microscope and AxioCam CCD camera.
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10

Quantifying Sp1 Levels in Brain Cancer

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To determine the levels of endogenous Sp1 in human brain cancer tissues, premade AccuMax array Brain cancer tissues for formalin fixed paraffin embedded slides (A221-V) were commercially purchased from ISU Abxis Co. LTD. (Korea). The tissue array contained 35 brain cancer specimens, including astrocytoma (WHO grade I), anaplastic astrocytoma (WHO grade III) and glioblastoma multiforme (WHO grade IV). Tissue sections were incubated with REAL Peroxidase-blocking solution (Dako, Cat # S2023, Denmark A/S produktionsvej 42) to quench endogenous peroxidase activity. Tissues were immunoreacted with anti-Sp1 antibody (Santa Cruz Biotechnology, USA; 1:200). The levels of endogenous Sp1 were stained with 3,3′-diaminobenzidine (DAB) substrate kit for peroxidase (Vector Laboratories, USA) after conjugation using avidin-biotinperoxidase complex (VECTASTATIN Universial Elite ABC Kits; Vector Laboratories, USA). Slides were counterstained with hematoxylin, dehydrated, and mounted with Permount solution (Fisher Scientific, USA). Images were acquired by Olympus BX53Fmicroscopy using cellSens Standard controller software (Olympus). Sp1-positive cells were counted in three different horizontally adjacent fields. The mean of triplicate experiments was significantly different depending on grades of glioma tissues.
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