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37 protocols using chloroform

1

Evaluation of Osteogenic Markers in 3D Spheroids

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The spheroids were cultured for 7 days and washed with PBS three
times. Cell lysis was performed by homogenizing the cells in trizol
(Takara Bio, Japan) and chloroform (Samchun Chemical, South Korea).
The specimens were centrifuged at 12000g at 4 °C
for 15 min. The supernatant was collected in a 1.5 mL Eppendorf tube
(USA). cDNA was synthesized with TOPscriptTM RT DryMIX (dT18 plus)
(Enzynomics, South Korea), and a reverse transcription reaction was
performed with a polymerase chain reaction (PCR) thermal cycler (Takara
Bio, Japan). The real-time polymerase chain reaction (RT-PCR) was
performed with an SYBR Green PCR Master Mix (Applied Biosystems, USA)
and StepOnePlus real-time PCR system (Applied Biosystems, USA). ALP
(alkaline phosphatase), Runx2 (runt-related transcription factor 2),
COL1A1 (collagen type I α1 chain), and OCN (osteocalcin), which
are osteogenesis-related markers, were used for this study.
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2

Characterization of Hackberry Lipid Profiles

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The analytical standard reference material (C4-C24) of fatty acid methyl esters mixture, triacylglycerols (including glyceryl tripalmitoleate (tripalmitolein) , glyceryl tristearate, etc.) , sterols (including campesterol, beta-sitosterol, stigmasterol, stigmastanol, etc.) , 5-α-cholestane and 1-eicosanol were obtained from Sigma-Aldrich (America) . Chloroform, acetone, n-hexane, methanol and acetonitrile as HPLC grade solvents were ordered from Samchun Pure Chemical Co., Ltd (Gyeonggi, South Korea) . Potassium iodide (KI) , glacial acetic acid and n-propanol were purchased from Merck Company (Darmstadt, Germany) .
Hackberry fruits were collected from wild trees from village areas (Nodeh) in the northwest of Iran (Nowdeh, Khalkhal, Ardebil, Iran) . Khalkhal is located at 37.3481 latitude and 48.4453 longitude and it is situated at 1790 meters above sea level. Nowdeh have four season with, spring, cool summer (+20-+30℃) , autumn and cold winter / snowing (-10℃-+8℃) .
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3

Manganese-Based Nanoparticle Synthesis

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Diethylene glycol (DEG), manganese (II) formate [Mn(COOH)2], tri-n-octylamine (TOA), oleic acid (OA), and polyacrylic acid (PAA) were purchased from Sigma-Aldrich. Ethanol, chloroform and a phthalate buffer (pH 4.0) were procured from Samchun Chemical. 1,2-distearoyl-sn-glycero-3-phosphoethanolamine-N-[methoxy(aminoethylene glycol)-2000] (PEG-Phospholipid) (mPEG-2000 PE, Avanti Polar Lipids, Inc.) was used as-purchased without any purification. All other reagents purchased from commercial sources were used as-obtained without further purification. Furthermore, ultrapure deionized water was used for all the synthesis processes.
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4

Characterization of Colorful Electrochromic Materials

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Basic blue 7, basic blue 26, ethyl violet, lithium bis(trifluoromethanesulfonyl)imide, and lithium bis(oxalato)borate were purchased from TCI. Propylene glycol methyl ether acetate was purchased from Sigma-Aldrich. Methylene chloride, chloroform, and other chemical solvents were purchased from Samchun Pure Chemical. All chemicals were used without any additional purification. Transparent glass substrates were provided by Paul Marienfeld GmbH & Co.KG and acrylic binder was supplied by Alphachem Corporation.
Absorption and transmittance spectra were measured using a Perkin Elmer Lambda 25 UV/Vis spectrophotometer. Chromatic characteristics of the color films were analyzed on a Scinco color spectrophotometer. X-ray diffraction patterns were measured using Bruker New D8 Advance X-Ray Diffractometer. 1H and 13C Nuclear Magnetic Resonance (NMR) spectra were recorded on a Bruker Avance 500 spectrometer running at 500 MHz using chloroform-d as a solvent with TMS as an internal standard. Mass spectra were obtained using an LCQ Fleet mass spectrometer with high resolution.
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5

RNA Extraction and cDNA Synthesis Protocol

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RNA was extracted from cell lysates (1 × 106 cells per mL) using an RNAiso reagent (TAKARA, Tokyo, Japan), following the manufacturer’s instructions. In brief, lysed samples were combined with chloroform (Samchun, Seoul, Republic of Korea) and centrifugation was performed at 12,000× g for 15 min at 4 °C to separate the RNA-containing aqueous phase, which was carefully transferred to a new tube. RNA was precipitated by the addition of isopropanol (Duksan, Seoul, Republic of Korea), followed by incubation for 10 min at room temperature. Precipitated RNA was pelleted by centrifugation at 12,000× g for 10 min at 4 °C and washed with 75% cold ethanol (Sigma-Aldrich). After drying for 10 min at room temperature, the RNA pellet was dissolved in diethyl-pyrocarbonate-treated water (DEPC water; Biosesang, Seongnam, Republic of Korea). RNA concentration and purity were determined using a NanoDrop spectrophotometer (Thermo Fisher Scientific).
For cDNA synthesis, 1 µg of extracted RNA was mixed with Oligo DT primers (TAKARA) and dNTPs (TAKARA) in RNase-free distilled water (TAKARA) and incubated at 65 °C for 5 min. The mixture was then combined with reverse transcriptase (TAKARA) and RNase inhibitor (TAKARA), followed by incubation at 42 °C for 45 min and at 95 °C for 5 min, using a thermal cycler (Bio-Rad).
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6

Total RNA Extraction from Cells

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Total RNA was extracted from the cells using the RNAiso reagent (Takara Bio Inc., Shiga, Japan) according to the manufacturer’s instructions. Briefly, cells (1 × 106 cells/mL) were washed with cold PBS and lysed with RNAiso reagent. Chloroform (Samchun, Seoul, Republic of Korea) was added to the lysate, and the mixture was centrifuged at 12,000× g for 15 min at 4 °C to separate the aqueous and organic phases. The aqueous phase was then transferred to a fresh tube, and RNA was precipitated by adding isopropanol (Duksan, Seoul, Republic of Korea) for 10 min at room temperature (RT). The RNA was centrifugated at 12,000× g for 10 min at 4 °C to precipitate the pellet. Subsequently, the RNA was washed with 75% cold-ethanol (Sigma-Aldrich, St. Louis, MO, USA), and centrifuged at 7500× g for 5 min at 4 °C. The washed RNA pellet was air-dried until the pellet was slightly transparent and dissolved in diethyl pyrocarbonate treated water (Biosesang, Seongnam, Republic of Korea). RNA quality and quantity were determined using a NanoDrop spectrophotometer (Thermo Fisher Scientific, Rockford, IL, USA).
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7

Synthesis of Heterocyclic Compounds using Transition Metal Complexes

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The 4-methoxybenzoic acid, pyridine-2,6-dicarbaldehyde, phosphorous oxychloride, carbohydrazide, isocyanate and isothiocyanates, Hydrazine hydrate (80%), TEA, CS2, KOH, sodium hydrogen carbonate, and glacial acetic acid were purchased from Sigma-Aldrich, Darmstadt, Germany. The chloride salts of the transition metals were obtained from Aldrich and Alfa Aesar. Ethanol, mEthanol, chloroform, deionized water, acetonitrile, dimethyl sulfoxide, petroleum ether, ethyl acetate, n-hexane, toluene (Samchun Chemicals, Seoul, Korea), H2SO4, acetic acid, and HCl (Jin Chemical and Pharmaceutical Co. Ltd., Seoul, Korea) were used in this experiment. Urease from jack bean (EC 3.5.1.5), Thio-urea, sodium nitroprusside, and active chloride were purchased from Sigma (St. Louis, MO, USA). Stock solutions of the reducing substrates were prepared in phosphate buffer (20 mM, pH 6.8).
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8

Analytical Methods for Compound Characterization

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n-Hexane, n-butanol (n-BuOH), ethyl acetate (EtOAc), chloroform (CHCl3), ethanol (EtOH), and pyridine-d5 (MA, USA) were obtained from SamChun Pure Chemical Co., Korea. Fast atom bombardment mass was conducted using a JEOL JMS-AX505WA (Jeol, Japan), mass spectrometer. A high-resolution LC/MS/MS analysis was done in a Xevo G2 Q-TOF LC/MS/MS system (Waters, USA) using an ACQUITY UPLC I Class system (Dionex). The 1H- and 13C-NMR spectra were checked with a Bruker Avance 500 NMR spectrophotometer (Bremen, Germany) with trimethylsilane (TMS), the internal standard. Thin-layer chromatography (TLC) was conducted on Kiesel gel 60 F254 (250-μm) silica gel plate (Art. 5715, Merck Co., Darmstadt, Germany), and visualized by a 10% H2SO4 spraying in a methanol (MeOH) solution. Accordingly, CC was performed with a LiChroprep RP-18 (40-63 μm, Merck Co.). An MPLC system (Biotage, Uppsala, Sweden), which was equipped with cartridges (KP-SIL, 39 mm × 225 mm), was used. The sugar determinations were conducted with an HP 5890 series II GC (Hewlett-Packard, Avondale, PA, USA) using an HP-5 capillary column (30 m × 0.32 mm i.d., 0.25-μm film thickness; Agilent, J&W Scientific, Folsom, CA, USA; injector temperature: 200°C; detector temperature: 200°C; column temperature: 230°C; and flow rate of He gas: 1 mL/min).
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9

Characterization of Ripe Jujube Fruits

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Ripe jujube fruits (initial moisture content: 3.78 ± 0.36%, protein: 2.13 ± 0.09%, sugar: 20.68 ± 1.72%, fat: 0.19 ± 0.08%, ash: 15.19 ± 5.80%) were collected from a research orchard in Birjand (Southern Khorasan, Iran). They were washed, depitted, and placed in plastic bags and stored in a freezer (-20 °C) until analyses. Chloroform was purchased from Samchun CO. (Korea) and isooctane was obtained from Lobal Chemie (India). All other chemicals and solvents (analytical and HPLC grades) were purchased from Sigma Aldrich (Gillingham, Dorset, U.K.) and Merck companies.
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10

Quantitative Analysis of Organic Compounds

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EC, butyl carbamate (BC) as an internal standard, sodium cyanate, and 2-aminobenzoic acid were supplied by Sigma-Aldrich Co. (St. Louis, MO, USA). Chloroform was obtained from Samchun Pure Chemical (Pyeongtaek, Korea), and ethanol was obtained from Honeywell Burdick & Jackson (Ulsan, Korea). Sodium hydroxide and citric acid were purchased from Junsei Chemicals (Tokyo, Japan). Hydrochloric acid was supplied by Daejung Chemicals and Metals (Siheung, Korea). All chemicals used in this study were of analytical grade. Water was deionized using an ultra-pure and pure all-in-one water purification system (Dongwon Scientific Co., Seoul, Korea).
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