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136 protocols using tgf β

1

Cardiac Fibroblasts: TGF-β and S-NO-HSA Effects

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Human ventricular cardiac fibroblasts (Lonza, Basel, Switzerland) were cultured in fibroblast basal medium supplemented with 0.1% insulin, 0.1% fibroblast growth factor, 0.1% GA-1000, and 10% FBS (all Lonza, Basel, Switzerland) as described previously (19 (link)). Cultures were washed once with DPBS (Thermo Fisher Scientific, CA, United States) when indicated, and split at a confluency level of 70%. Cells were treated for 24 h follows: 1) No treatment—control; 2) 20 ng/ml TGF-β (Abcam, Cambridge, United Kingdom); 3) 25 μmol/L HSA; 4) 25 μmol/L S-NO-HSA; 5) 20 ng/ml TGF-β + 25 μmol/L HSA and 6) 20 ng/ml TGF-β + 25 μmol/L S-NO-HSA. Total RNA was extracted, and expression of target genes (Supplementary Table S5) were assessed by RT-qPCR (Supplementary Appendix S1).
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2

TGFβ-induced Collagen I and αSMA Expression

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Rat2 cells were plated at a density of 105 cells/mL in complete medium. After 24 hours, the cells were serum-starved with 0.5% FBS for 12 hours and treated with TGFβ (Abcam, Cambridge, MA, USA) for 24 hours before the TGFβ was washed out with complete medium for 24 hours (Fig. 1). The cells were homogenized in lysis buffer and separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). Then, the proteins were transferred to nitrocellulose membranes and the signals were detected using antibodies for collagen I, α-smooth muscle actin (αSMA, Abcam) and glyceraldehyde 3-phosphate dehydrogenase (GAPDH, Cell Signaling Biotechnology, Danvers, MA, USA).
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3

Isolation and Activation of CD4+ T Cells

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In order to avoid contamination by CD4+ cells that release IL-17, such as macrophages [37 (link)], PBMCs were thawed and human CD4+ T cells were isolated by negative depletion of CD8+, CD14+, CD15+, CD16+, CD19+, CD36+, CD56+, CD123+, TCR y/δ and CD235a+, using the CD4+ T cell isolation kit (Miltenyi Biotec). In this way also AML blasts, where present, were included in the subsequent analysis. Cells were cultured in RPMI 1640 medium (PAA) supplemented with 10% heat inactivated FBS, 2 mM l-glutamine (Euroclone), penicillin (100 U/ml) and streptomycin (100 μg/ml) (PAA). CD4+ cells were primed for 24 h at 37°C with IL-6 (30 ng/ml) (Miltenyi Biotec) or TGF-β (10 ng/ml) (Abcam) or a combination of IL-6 and TGF-β. T cells were then incubated for 5 h at 37°C with phorbol 12-myristate-13-acetate (PMA, 50 ng/ml) and ionomycin (1 μg/ml) (Invitrogen) in the presence of GolgiStop Protein Transport Inhibitor (BD Pharmingen). An unstimulated control prepared by incubating CD4+ cells with GolgiStop Protein Transport Inhibitor only was included for each experiment.
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4

TGF-β Induced EMT in PC3 Cells

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PC3 cells were cultured in T-75 flask until 70% to 80% confluency. The cells were then serum starved for 24 hours in serum-free medium. Post serum starvation, TGFβ (Abcam, USA) was added to the cells to a final concentration of 5 ng/mL. TGFβ induction was given for 0 hours (Control), 6 and 24 hours.
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5

Immunohistochemical Analysis of Heat-Induced Protein

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Using a hot air oven, tissue section slides were heated at 60 °C for about 25 minutes (Venticell, MMM, Einrichtungen, Germany). The tissue sections were de-paraffinized in xylene and rehydrated with a graded alcohol series. The sample slides were boiled in 10 mM sodium citrate buffer in a microwave for antigen retrieval. Next, 0.03% hydrogen peroxide containing sodium azide was applied for 5 minutes to block endogenous peroxidase. Tissue sections were then washed gently with wash buffer, then incubated with biotinylated primary antibodies against Hsp70 (1:500), Bax (1:200) and TGF-β (1:500) (Abcam, UK) for 15 minutes. The tissue sections were washed gently with wash buffer and placed in a buffer bath. Next, the slides were placed in a humidified chamber with a sufficient amount of streptavidin-HRP (streptavidin conjugated to horseradish peroxidase in PBS containing an anti-microbial agent) for 15 minutes. Diaminobenzidine-substrate-chromagen was added to the tissue sections and incubated for another 5 minutes. This was followed by washing and counterstaining with hematoxylin for 5 sec. The tissue sections were then dipped in weak ammonia (0.037 mol/L) 10 times and washed with distilled water. Positive immunohistochemical findings were observed by the formation of brown staining and assessed by light microscopy.
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6

SERPINE1 Expression and Secretion Kinetics

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To determine SERPINE1 mRNA expression and protein secretion kinetics, we treated A549 cells or HAE cultures with the following conditions: IFN-β (Abcam) at 1pmol/ml, TGF-β (Abcam) at 1 pg/ml, IAV WSN/33 infection at MOI 1 (A549) or 0.1 (HAE). mRNA levels, normalized to housekeeping gene RPS-11, were determined by qRT-PCR (SuperScript III First Strand Synthesis System, Life Technologies) and SYBR green assay (Roche) as described previously. Primer sequences can be found in Table S3. Total PAI-1 protein levels from cell supernatants or cell lysates (1% Triton X-100 in PBS, sonication for 10 min) were measured by Human PAI-1 Platinum ELISA (BD Biosciences). mPAI-1 levels from mouse lung homogenates were measured by PAI-1 total mouse ELISA kit (Abcam).
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7

Protein Expression Analysis Protocol

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Protein lysates of Vector‐TEVs, Foe‐TEVs or Foe‐Th cells were prepared according to standard procedures, and the contents of proteins were assessed by the BCA protein concentration measurement kit (Thermo Fisher Scientific). Subsequently, the samples were isolated using Bis‐Tris gel (Invitrogen), and then transferred to polyvinylidene difluoride membranes (Millipore). The membrane was blocked in TBS‐T in 5% BSA for 1 h, incubated with primary antibodies overnight at 4 °C, then rinsing the membranes with PBS. Then, the membranes were covered with secondary antibody. Incubated at room temperature for 2 h, signals were assessed by enhanced Chemiluminescence Advanced System (GE Healthcare). The primary antibodies involving against CD9 (1:1000, Abcam), CD63 (1:1000, Abcam), Tubulin (1:1000, Abcam), TSG101(1:1000, Abcam), CTLA‐4 (1:1000, Abcam), TGF‐β (1:1000, Abcam), IL‐10 (1:1000, Abcam), PDCD‐1 (1:1000, Abcam), CD35 (1:1000, Abcam), CD73 (1:1000, Abcam), LAG3 (1:1000, Abcam), TIGIT (1:1000, Abcam), calnexin (1:1000, Abcam), histone 3 (1:1000, Abcam), and GM13 (1:1000, Abcam), ITGA4 (1:800, Abcam), ITGAL (1:800, Abcam), ITGB1 (1:800, Abcam), ITGB2 (1:800, Abcam) and secondary antibody Alexa Fluor Plus 800 (1:10 000, Thermos) were used.
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8

Immunoblotting Analysis of Protein Expression

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The tissue was harvested at indicated time points and lysed in a lysis buffer (0.5% Nonidet P-40, 10 mM Tris, pH 7.4, 150 mM Nacl, 1 mM EDTA, 1 mM Na3VO4) with a protease inhibitor (1 mM PMSF). BCA assay was used to quantify protein level. Cell lysates (30 μg protein) were resolved by 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) (Immobilon; Millipore, Bedford, MA). For immunoblotting, primary antibodies against α-SMA, TGF-β, α-tubulin and β-actin (1:1000) (Abcam, Cambridge, UK) and IgG-HRP secondary antibody (1:2000) were used. Chemiluminsescent signals were acquired using Storm 860 PhosphorImager (Molecular Dynamics, Sunnyvale, CA). Densitometric analysis was performed using Image J 5.0 software. Four biological replicates were performed.
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9

Femoral Artery Protein Expression Analysis

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The femoral artery tissues were homogenized after the addition of RIPA lysis buffer (Beyotime Institute of Biotechnology). Then the supernatant was centrifuged at 5,000 × g for 10 min at 4°C. BCA assay kit (cat. no. p0011; Beyotime Institute of Biotechnology) was used to determine total protein content. A total of 10 µg protein was loaded per lane and separated by SDS-PAGE (12% gel). After being separated, the proteins were transferred to a PVDF membrane (Roche Diagnostics), which was blocked with 5% skim milk for 1 h at room temperature. The specific primary antibodies including TLR4 (1:500; cat. no. ab217274; Abcam), NF-κB (1:500; cat. no. ab32360; Abcam), MCP-1 (1:500; cat. no. ab25124; Abcam), TGF-β (1:500; cat. no. ab92486; Abcam) and GAPDH (1:500; cat. no. ab181602; Abcam), were used to incubate with the membrane overnight at 4°C. The membrane was washed with TBS with Tween-20 (TBST) five times, and the goat anti-rabbit IgG H&L secondary antibody (1:1,000; cat. no. ab150077; Abcam) was used to incubate the membrane for 2 h at room temperature. After washing with TBST for 1 min, SuperSignal West Pico PLUS Chemiluminescent Substrate (Thermo Fisher Scientific, Inc.) was used to visualize the signals. Quantity One software (version 4.0, Bio-Rad Laboratories, Inc.) was used for quantification.
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10

Immunoblot Analysis of GC Cell Signaling

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The protein was extracted from GC cells and tissues and transferred to polyvinylidene difluoride (PVDF) membranes. The transferred membranes were blocked in 5% non-fat powdered milk for 2h and incubated with primary antibodies overnight at 4°C. The membranes were then incubated for 2h in secondary antibodies at room temperature. The primary antibodies used in this study were as follows: Smad3 (diluted 1:500, Abcam), TGF-β, c-Myc, CDK2, CDK4, CDK6, GAPDH (diluted 1:1000, Cell Signaling Technology). GAPDH was used as an internal control.
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