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9 protocols using isolera one flash purification system

1

Purification and Characterization of Compounds

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All starting materials were commercially procured and were used without further purification, unless specified. Reaction solvents were purified by passage through alumina columns on a purification system manufactured by Innovative Technology (Newburyport, MA). For all microwave reactions a Biotage® Initiator+ was used and the absorbance was set in accordance with the recommendations set by the manufacturer. NMR spectra were obtained on Varian NMR systems, operating at 400 or 500 MHz for 1 H acquisitions. LCMS analysis was performed using a Waters Alliance reverse phase HPLC (columns Waters SunFire C18 4.6 × 50 mm, 3.5 μm, or Waters SunFire C8 4.6 × 50 mm, 3.5 μm), with single-wavelength UV–visible detector and LCT Premier time-of-flight mass spectrometer (electrospray ionization) or Waters Micromass ZQ detector (electrospray ionization). Optical rotations were obtained on a Jasco P-2000. Purification of intermediates and final compounds was performed using silica gel chromatography on a Biotage® Isolera™ One Flash purification system. Where required, final compounds were purified by preparative reverse phase HPLC (columns Waters Symmetry RP8 30 × 50 mm, 5 μm column, or OBD RP18 30 × 50 mm, 5 μm), with a single wavelength UV–visible detector and Waters Micromass ZQ (electrospray ionization). All final compounds have purities greater than 95% based upon LC/MS analysis.
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2

Purification and Characterization of Organic Compounds

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All the chemicals were used as received unless otherwise stated. Diethyl ether (Et2O), tetrahydrofuran (THF), methylene chloride (DCM), and toluene were dried over a column of molecular sieves under argon. All reactions were carried out under an inert nitrogen atmosphere unless otherwise stated. Crude products were purified in a Biotage Isolera One Flash Purification System using Biotage prepacked cartridges (50 μm irregular silica). Yields refer to isolated material following silica gel chromatography. The purity of the compounds tested was determined by quantitative 1H NMR using the absolute internal calibrant method (see the Supporting Information). 1H NMR and 13C NMR spectra were recorded on a JEOL 400 MHz spectrometer using CDCl3 and dimethyl sulfoxide-d6 (DMSO-d6) as the deuterated solvent [≥99.8 atom % D, contains 0.03% (v/v) TMS]. The chemical shifts (δ) were reported in parts per million (ppm) relative to the internal standard TMS. High-resolution mass spectroscopy (HRMS) data were obtained on a UHR-TOF maXis 4G instrument (Bruker Daltonics, Bremen, Germany) using electrospray ionization (ESI). Melting points (mp) were taken in open capillaries on a Stuart melting point apparatus SMP11 and are uncorrected.
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3

Purification and Characterization of Organic Compounds

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Reagents purchased were used as received, unless otherwise noted. Purification of intermediates and final compounds was performed using silica gel chromatography using the Biotage® IsoleraOne flash purification system. When required, preparative HPLC was conducted for final compounds on Waters FractionLynx system using acetonitrile/water and 0.1% formic acid gradient and collected based on UV monitoring at 254 nm. LCMS analysis was performed using a Waters Alliance reverse phase HPLC (columns Waters SunFire C18 4.6 × 50 mm, 3.5 μm, or Waters SunFire C8 4.6 × 50 mm, 3.5 μm), using a multi-wavelength photodiode array detector from 210 nm to 600 nm and Waters Micromass ZQ detector (electrospray ionization). All compounds tested had a purity of > 95% as measured by LCMS. 1H NMR spectra were obtained with Varian NMR systems, operating at either 400 or 500 MHz at room temperature, using solvents from Cambridge Isotope Laboratories. Chemical shifts (δ, ppm) are reported relative to the solvent peak (CDCl3: 7.26 [1H]; DMSO-d6: 2.50 [1H]; Acetone-d6: 2.05; or CD3OD: 3.31 [1H]). Data for 1H NMR spectra are reported as follows: chemical shift (ppm), multiplicity (s for singlet, d for doublet, t for triplet, dd for doublet of doublet, m for multiplet), coupling constant (Hz), and integration. Compounds obtained from GSK in-house library were not resynthesized unless otherwise noted.
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4

NMR and Mass Spectrometry Characterization

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Solvents and reagents were obtained from commercial sources and were used without further purification. NMR spectra were recorded on a Varian Oxford AS600 600 MHz instrument. NMR chemical shifts are expressed in ppm relative to internal solvent peaks, and coupling constants are measured in Hz (br = broad). Mass spectra were recorded on a Waters Micromass ZQ instrument using an ESI source coupled to a Waters 2525 HPLC system operating in reverse mode with Waters SunfireTM C185 uM 4.6×50 mm column. Flash chromatography was performed using a Biotage Isolera One flash purification system.
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5

Purification and Characterization of Organic Compounds

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All reagents and solvents were obtained from commercial sources and used without further purification. Proton (1H) spectra were recorded on a Bruker DRX-400 MHz NMR spectrometer or on a Bruker AV-400 MHz NMR spectrometer in deuterated solvents. Chemical shifts were reported in δ (ppm) and spin-spin coupling constants as J (Hz) values and signals are designated as follows: (s) singlet, (br-s) broad singlet, (d) doublet, (dd) doublet of doublet, (t) triplet, and (m) multiplet. Mass spectra (MS) were recorded on an Advion CMS mass spectrometer. Flash purification was conducted with a Biotage Isolera One flash purification system using HP-Sil (Biotage) or puriFlash columns (Interchim) and the solvent gradient indicated in the specific examples. Thin-layer chromatography (TLC) was carried out on silica gel plates with UV detection. Preparative thin-layer chromatography (Prep-TLC) was conducted with 0.5 mm or 1 mm silica gel plates (Analtech: Uniplate, F254) and the solvents indicated in the specific examples.
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6

Purification of Policosanols by Flash Chromatography

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The raw product was submitted to a further purification by means of preparative flash column liquid chromatography with an Isolera™ One flash purification system (Biotage AB, Uppsala, Sweden). The separation of PCs from other lipophilic compounds was performed by loading 1 g of the mixture on a silica gel SNAP cartridge (25 g) (Biotage AB, Uppala, Sweden), under isocratic elution with DCM at a flow rate of 25 mL/min. The volume of the fractions collected was 18 mL. The elution was monitored by thin layer chromatography (TLC), together with a standard mixture of alkanes (from C8 to C40) and policosanols (C24OH, C26OH, C28OH, C30OH), with a mobile phase consisting of DCM-CHCl3 (1:1 v/v). For the visualization of the bands, plates were dipped in a cerium sulphate solution and, subsequently, heated until the blue-colored spots were visible. Fractions containing the compounds of interest were then pooled and brought to dryness under vacuum.
The purified mixture of PCs was finally submitted to HPLC-ELSD. For this purpose, 7 mg of sample was dissolved in 1 mL of CHCl3 and filtered through syringe 0.22 μm PTFE filter before injection into the HPLC system.
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7

Palladium-Catalyzed Acrylamide Synthesis

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All reactions were carried out using oven dried glassware and magnetic stirring under an atmosphere of air unless otherwise stated. Reaction temperatures are reported as the temperature of the oil bath surrounding the vessel. Analytical thin layer chromatography was performed on silica gel aluminium plates with F-254 indicator and visualized by UV light (254 nm) and/or chemical staining with a KMnO4 solution or a phosphomolybdic acid solution. Flash chromatography was performed on Merck silica gel (40-63 mesh) either by standard technique or by Biotage Isolera One Flash Purification System (gradient of solvents; PE = petroleum ether, Et2O = diethyl ether). 1 H NMR spectra were recorded on a Bruker DXP 300 MHz spectrometer at 300.1 MHz, 13 C spectra at 75. PdCl2 was purchased from Sigma-Aldrich Ltd. Dry DMF (N,N-Dimethylformamide, in sealed bottle with molecular sieves) was purchased from Acros Organics Ltd. Reagent I was synthesized according to the literature procedure. 13 Acrylamides 1a, 10c 1b, 14 1c, 10c 1e-1f, 10c 1g, 14 1h-1i, 10c 1j, 14 1k-1l, 10c 1m, 14 1n, 10c 1p, 14 1q-1r, 10c 1s, 15 1t, 10c 1u 14 were synthesized according to the preview reports in the literature. Starting materials 1v, 16 3, 16 4 17 and 5 10b were prepared according to literature procedures.
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8

Purification and Characterization of Organic Compound

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General Remarks All reagents and solvents purchased were of the highest commercial quality and were used without further purification. 1 H-NMR spectra were measured at 400 MHz on a VARIAN 400-MR spectrometer or at 500 MHz on an Agilent INOVA-500 spectrometer, and 13 (link) C-NMR spectra were measured at 100 MHz on a VARIAN 400-MR spectrometer or at 125 MHz on an Agilent INOVA-500 spectrometer. High resolution mass spectra were recorded using a Jeol JMS-T100LP AccuTOF instrument. IR spectra were recorded using a JASCO FT/IR-4700 spectrometer in attenuated total reflection (ATR) mode at room temperature. Silica gel column chromatography was performed using Silica Gel 60 (spherical and neutral; 100 to 210 µm, 37560-79, Kanto Chemical Co., Japan) and the Isolera One flash purification system (Biotage, Sweden). After stirring overnight at reflux temperature, the reaction mixture was concentrated under reduced pressure. The residue was dissolved in AcOEt (60 mL), and the solution was washed with water (40 mL×2) and brine (40 mL). The organic layer was dried over Na 2 SO 4 , filtered, and concentrated under reduced pressure. The resulting residue was purified using the Isolera One system (hexane/ AcOEt) to afford 16 as a yellow oil (4435 mg, 81%).
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9

Microwave-Assisted Synthesis of Isatin Derivatives

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Reagents were purchased from commercial sources and used without further purification. Melting points were determined with a Mettler Toledo MP70 apparatus.
Crude residues were purified with the indicated solvent as eluent by flash column chromatography carried out at medium pressure using silica gel (E. Merck, Grade 60, particle size 0.040 -0.063 mm, 230 -240 mesh ASTM) or IsoleraOne flash purification system from Biotage. Compounds were detected with UV light (254 nm). General procedure for compounds 1 -21, 30 -50: Following the procedure described by Pandey et al. 17 with some modifications. A mixture of the isatin derivative (1 eq), the corresponding amine derivative (1 eq) and MMT-K10 (20 mg for 1 mmol of the isatin derivative) and toluene if necessary, was heated under microwave irradiation (6 -90 min, 100 -110 ºC). After cooling to room temperature, ethyl acetate (50 mL) was added and the mixture was extracted with a saturated solution of NaHCO 3 (50 mL x 3).
Finally, the organic phase was dried over magnesium sulfate and the solvent evaporated under reduced pressure. The residue was chromatographed as indicated in each case.
In case the amine was in hydrochloride form, the amine derivative (1 eq) was stirred
with triethylamine (1 eq) and toluene (3 mL) for 1 h at room temperature.
, 0.5H), 7.01 (ddd, J = 8.9,
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