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Mir 154

Manufactured by Panasonic
Sourced in Japan

The MIR-154 is a compact, high-performance laboratory equipment designed for a variety of scientific applications. It features a durable construction and advanced technology to provide reliable and consistent results. The core function of the MIR-154 is to perform precise measurements and analyses, but the specific intended use may vary depending on the specific requirements of the user.

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11 protocols using mir 154

1

Thermal and Frost Tolerance Assays

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Crassocephalum crepidioides Ile-Ife and C. rubens Mali were grown for 4 weeks in incubators set to standard growth conditions of 25 ± 2°C and long days (8-h dark/16 h white light, with an intensity of 80 μmol m–2 s–1). They were then directly exposed to a temperature of 45°C using an incubator (MIR-154, Panasonic, Japan) and a duration of 2–8 h, before returning to 25°C. Survival was analyzed after 2 weeks of recovery and was defined as the ability to produce new leaves from an intact shoot apical meristem (SAM).
Frost tolerance assays were also performed with 4-week-old plants pre-grown in the Bright Boy incubators at 25 ± 2°C on long days, but by moving them directly to chilling and freezing temperatures of + 4°C to –4°C for 3 h in an incubator (MIR-154, Panasonic, Japan), before returning them to 25°C. Survival was analyzed after 2 weeks of recovery and was defined as the ability to produce new leaves from an intact SAM.
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2

Circadian Luciferase Imaging in Plants

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At dusk of the fourth day of growth, seedlings were sprayed with a 5 mM D-Luciferin (Promega, Madison, WI), 0.01% Triton X-100 solution (Sigma-Aldrich, St. Louis, MO). At dawn of the fifth day, 6–8 seedlings were transferred into a 3- by 3-cm area of the media plate in order to fit inside of the camera’s field of view. Plates were orientated vertically during imaging.
Imaging was performed inside of growth incubators (MIR-154; Panasonic, Japan) at a constant temperature of 22 °C and under an equal mix of red and blue light–emitting diodes (40 μmol m−2 s−1 total), unless specified as red light only (40 μmol m−2 s−1 red) or blue light only (40 μmol m−2 s−1 blue). For experiments under LD cycles, lights were switched on to full intensity at dawn and completely off at dusk. Images were taken every 90 min for 6 d, with an exposure time of 20 min. Images were taken using a LUMO charge-coupled device camera (QImaging, Canada) controlled using Micro-Manager (V2.0; Open Imaging) as previously described [89 (link),90 (link)]. The camera lens (Xenon 25 mm f/0.95; Schneider, Germany) was modified with a 5-mm optical spacer (Cosmicar, Japan) to increase the focal length and decrease the working distance.
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3

Bioluminescence Assay for Circadian Rhythms

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White, 96-well plates (Nunclon Delta, Thermo Fisher Scientific) were used, with each well inoculated with 5 × 105 cells. Plates were sealed with a transparent, evaporation-free cover (Optical Adhesive Covers, Applied Biosystems, Life Technologies). Cultures were exposed to light-darkness cycles as indicated in the text, after which the cultures were released to constant conditions (either constant darkness or light). The temperature was kept constant at 27°C. We measured bioluminescence (Berthold Centro LB960 XS3 or Berthold Mithras LB 940 Multimode Plate Reader) for 1 s each hour. All experiments were carried out in temperature-controlled incubators (MIR-154, Panasonic, Japan or Percival Intellus, Percival, USA). In entrainment experiments, the plates were ejected from the machine between readings for exposure to light.
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4

Culicoides Midge Collection and Incubation

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Collections of Culicoides biting midges were made at farms in two areas in Switzerland, one in the Swiss Plateau (one site, 650 masl), the other in the pre-alpine region (two sites at around 1550 masl, referred to as pre-alpine I; one site at 2030 masl, referred to as pre-alpine II) (Table 1). Insects were trapped alive as described [38 (link)]. The light traps were operated from approximately 1–2 h before sunset to 1–2 h after sunrise, between June and October 2015-2017. Wet cotton pads were placed around the cages during transportation to the laboratory where the cages were transferred to incubators (Panasonic MIR-154, Gunma, Japan) with a fluctuating temperature (13–25 °C, mean 19 °C) and a relative humidity of 85–90% (Fig. 1). Cotton wool pads with 10% sucrose solution were supplemented.

Areas and features of the sites where Culicoides were collected

AreaSite (altitude, masl)CoordinatesPredominant animal species at farm
Swiss PlateauAdlisberg (650)47.22298°N,008.34565°EHorses
Pre-alpine IDavos Wolfgang (1575)46.82638°N,009.85732°ESheep and pigs
Lenzerheide (1542)46.73014°N,009.56091°EHorses
Pre-alpine IIDavos, Clavadeler Alp (2030)46.76650°N,009.81831°ECattle

Fluctuating temperature regime during incubation of Culicoides

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5

Zebrafish Maintenance and Breeding Protocol

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An Assam wild-type strain of zebrafish was a kind gift from CSIR-IGIB, New Delhi, India. The fishes were maintained under laboratory conditions at Ahmedabad University (Ahmedabad, Gujarat, India). The fishes were grown as per the standard protocols of the Zebrafish Information Network (ZFIN). Briefly, the male and female zebrafish were kept separately in a 20 L aquarium filled with artificial freshwater prepared by dissolving 60 mg L−1 of sea salt (Red Sea, India) in distilled water (dH2O). The temperature was maintained at 26–28 °C with a 14 h light/10 h dark cycle. The adult zebrafish were fed with live brine shrimp (Artemia) thrice a day. Zebrafish eggs were collected alternately in the morning by setup breeding with a ratio of three females to two males in the breeding chamber. The eggs were collected into sterile Petri-plates filled with egg water and were raised at 28.0 ± 1.0 °C in a BOD incubator (MIR-154, Panasonic, Japan). The embryos were further transferred into E3 medium (5 mM NaCl, 0.17 mM KCl, 0.33 mM CaCl2 and 0.33 mM MgSO4 and the pH was adjusted to 7.0–7.2) before the experiments.
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6

Fabric-based Gas Sensor Characterization

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Gas sensing tests were carried out using an in-house gas characterisation system comprising an air-tight steel chamber housed in a Panasonic (MIR-154) cooled incubator with probes for connecting to the sensor pads, a Keithley 6487 picoammeter/voltage source for biasing and measuring the current through the sensor, a vacuum flow rates, and gas cylinders. The tests carried out spanned 9 h in each case for both dry air and humid air conditions. In every case, the RGO and RGO/MoS2-coated fabric were placed on the sample holder. The probes were then brought into contact with it. The separation of the probes was kept constant at 2 cm all through the test cases to ensure uniformity of test situations. The voltage used was 3 V for biasing the sensor. For the dry air tests with increasing target gas concentration, the sensor was exposed to dry air until the resistance was constant. Then short time exposures of 10 min to NO2, followed by dry air 30 min, and then to 20 ppb NO2 with concentration increased by 20 ppb each time and the cycle repeated until 100 ppb. For humid air tests, the fabric was exposed to 65% RH air and allowed to reach stability before exposure to 100 ppb NO2 for 10 min, and then exposed to humid air for 4 h to allow for recovery.
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7

Thermoneutral Housing for Mice

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To keep animals at thermoneutral temperature, mice were housed at 30°C in a cooled incubator (MIR-154; Panasonic, Osaka, Japan) with 12-h light/dark cycle.
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8

Sleep Patterns Under Caffeine Exposure

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To record the sleep under short exposure to caffeine, 1-, 10-, 20-, and 30-day-old w1118 male flies were transferred to locomotor activity glass tubes (65 mm length, 5 mm diameter) containing cornmeal dextrose medium for acclimatization 12 h prior to the start of the experiment. These flies were transferred into locomotor activity glass tubes containing cornmeal dextrose medium with different concentrations of caffeine (0.0, 0.5, 0.75, and 1 mg/mL) just before ZT 00 on the day of locomotor activity recording. Sleep was recorded by using the Drosophila Activity Monitors (Trikinetics, USA) for 24 h under LD in a cooled incubator (MIR-154, Panasonic, Japan). On the subsequent day, at ZT 00, these flies were transferred back to fresh cornmeal dextrose medium without caffeine to record their sleep rebound for the next 24 h. Activity counts were measured at every 1 min interval and sleep was defined as 5 min or more of continuous inactivity. Sleep parameters such as total sleep duration, sleep bout length, sleep bout number, sleep latency, and sleep in 1 h were analyzed using Sleep and Circadian Analysis MATLAB Program (SCAMP) [27 (link)]. To confirm the results, each experiment was replicated three times with a sample size of 25–32 flies in each replicate. The data obtained from one such biological replicate is used in the results and figures.
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9

Measuring Larval Development Timing

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We used the reporter strains PE255 and MRS229 to measure larval developmental timing. In order to ensure that all animals started development at the same time, arrested L1s were first manually pipetted to a white 96-well plate, one worm per well, containing 100 μl of S-basal with 100 μM D-luciferin. Development was resumed by addition of 100 μl of S-basal with 20 g/L E. coli OP50 and 100 μM D-luciferin. Plates were sealed with a gas-permeable cover (Breathe Easier, Diversified Biotech, Dedham, MA, USA). We measured luminescence in a Berthold Centro LB960 XS3 (Berthold Technologies, Bad Wildbad, Germany) for 1 s, at 5 min intervals. Experiments were done inside temperature-controlled incubators (Panasonic MIR-154). We analysed the raw data from the luminometer as described in Olmedo et al. [48 (link)]. Briefly, the raw data was trend-corrected and thresholded using 75% of the moving average to produce a binarised output in order to determine onset and offset of the molts. The data was evaluated for onset and offset of molting by detecting the transitions in the binarised data. To assess statistics, we performed unpaired t tests using GraphPad Prism software.
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10

Culicoides Collection and Viral RNA Extraction

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Culicoides were collected from a horse farm on the Swiss Plateau (650 masl; Zürich area; 47°22'31"N, 8°34'56"E; Koeppen-Geiger climate classification Cfb, www.koeppen-geiger.vu-wien.ac.at.) and from a farm in the pre-alpine region (2130 masl; Juf; 46°26'41"N, 9°34'51"E; housing cattle, sheep and chicken; classification Df b). Insects were caught alive in cages (17,5×17,5×17,5 cm; BugDorm 42222F; MegaView Science, Taiwan) using Onderstepoort UV light traps, as previously described. 18 Traps were placed on the outside walls of barn buildings 1,5-2 m above ground, and an additional trap was operated inside the hen house at the pre-alpine site. Cages were transferred to incubators (Panasonic MIR-154, Japan) with fluctuating temperature regimes of either 22 ± 6 °C (low fluctuating temperature regime, LFT) or 26 and supplemented to 1 ml as described. 24 Aliquots (140 µl) were processed immediately for viral RNA extraction, and the rest of the homogenates were stored at -80 °C. All feeding, incubation, dissection and homogenisation of infected Culicoides were performed in a laboratory of biosafety level 3 (BSL3).
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