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Coomassie brilliant blue r 250

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Coomassie Brilliant Blue R-250 is a dye used for the detection and quantification of proteins in various laboratory applications, such as gel electrophoresis and protein assays. It is a sensitive and widely-used staining method that can detect microgram quantities of proteins.

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29 protocols using coomassie brilliant blue r 250

1

Influenza Protein Extraction and Immunoblotting

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Proteins were extracted from the same samples harvested for viral RNA quantification, above. Extractions from buffer RLT were performed using the iced acetone method described by the manufacturer (Qiagen). Proteins were separated by denaturing SDS polyacrylamide gel electrophoresis, and transferred to PVDF (Pall Corp., Pensacola, FL). Immunoblotting was performed with monoclonal antbody to influenza NP (AA5H; AbCam, Cambridge, MA) or anti-M1 polyclonal (a kind gift of Dr. Adolfo García-Sastre, Icahn School of Medicine at Mount Sinai), and peroxidase conjugated secondary antiserum. Blots were imaged with Supersignal substrate (ThermoFisher Scientific, Carlsbad, CA), on a Cell Biosciences FluorChem HD2. Consistent loading was monitored by Coomassie Brilliant Blue R-250 (Amresco, Solon, OH) staining of the post-transfer gel.
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2

Recombinant Human Growth Hormone Extraction

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The transgenic milk samples were diluted with a 2-fold volume of EDTA (Sigma, St. Louis, MO, USA) at a final concentration of 20 mM to extract rhGH within casein micelles. The treated milk was centrifuged at 11,000 × g for 1 h at 4°C. Defatted milk samples were acidified by slowly adding 50% acetic acid (Merck Millipore, Billerica, MA, USA) with constant stirring until the milk reached pH 4.25, which precipitated casein. The samples were then centrifuged at 11,000 × g for 1 h at 4°C. The whey samples were neutralized using 2 M Tris (AMRESCO, Solon, OH, USA) and filtered through a 0.2-μm hollow fiber membrane microfilter (GE Healthcare Life Sciences, Little Chalfont, UK). Samples containing rhGH were clarified by tangential flow filtration with a nominal 300-kDa pore size hollow fiber membrane ultrafilter (GE Healthcare Life Sciences, Little Chalfont, UK). The 300-kDa filter permeate was concentrated and diafiltered through a nominal 5-kDa cut-off size hollow fiber membrane ultrafilter (GE Healthcare Life Sciences, Little Chalfont, UK). The supernatant from each step was analyzed by SDS-PAGE using 13.5% (w/v) gel under reducing conditions. Proteins were stained with Coomassie brilliant blue R-250 (AMRESCO, Solon, OH, USA).
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3

Gelatin Zymography of KLK4 Proteins

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The activities of the expressed wild type and mutant KLK4 proteins were assayed using gelatin zymography. Thermolysin (Sigma-Aldrich, St. Louis, MO, USA) was dissolved in a buffer containing 50 mM Tris and 5 mM CaCl2 at a concentration of 20 µg/mL. Then, 10 µL of concentrated media was mixed with 1 µL of Thermolysin solution, and the mixture was incubated at 37 °C for 16 h. Samples were mixed with 5× non-reducing loading buffer and electrophoresed on 12% SDS-PAGE gel containing 0.1% gelatin (Sigma-Aldrich) at 80 V for 5 h in an ice box. After electrophoresis, the gel was incubated in 1× renaturing buffer (Novex, Waltham, MA, USA) at room temperature for 15 min and this step was repeated 3 times. After the renaturing step, the gel was incubated at 37 °C for 24 h in 1× developing buffer (Novex). The zymogram was stained with 0.5% Coomassie brilliant blue R-250 (Amresco, Radnor, PA, USA), dissolved in 45% MeOH, 10% acetic acid staining solution for 1 h and finally visualized after washing with destaining solution (25% EtOH, 10% acetic acid).
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4

ERC6 Protein Purification and Visualization

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Purified ERC6 was resolved by SDS-PAGE using 4–12% NuPage Bis-Tris gels (Invitrogen) according to the manufacturer’s instructions. The gels were stained with Coomassie Brilliant Blue R-250 (Amresco, Colon, OH, USA), as described previously25 (link).
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5

Quantifying CDT Holotoxin Exposure in AGS Cells

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Each recombinant CdtA, CdtB, and CdtC was prepared and subjected to 12% SDS-PAGE, respectively. The gel was stained with Coomassie Brilliant Blue R-250 (Amresco, Solon, OH) for further analysis. AGS cells (5 × 105) were exposed to CDT holotoxin with various concentrations for different time durations. The cell lysates were prepared to resolve by 12% SDS-PAGE and transferred onto polyvinylidene difluoride membranes (Millipore, Billerica, MA). Membranes were probed with primary antibodies: RAGE and HMGB1 (Abcam, Cambridge, UK), and β-actin (Santa Cruz Biotechnology, Santa Cruz, CA) at 4°C overnight. The membranes were then incubated with horseradish peroxidase-conjugated secondary antibody (Millipore, Temecula, CA). The proteins of interests were detected using the ECL Western Blotting Detection Reagent (GE Healthcare, Piscataway, NJ) and visualized by using Azure c400 system and AzureSpot Analysis Software (Azure Biosystems, Dublin, CA).
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6

Zymographic Analysis of MMP-2 and MMP-9

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SK-MEL-2, SK-MEL-24, and HT1080 cell lines were cultured in serum-free media for 24 hours, and the conditioned media was concentrated using VIVASPIN 20 (Sartorius Stedim Biotech GmbH, Goettingen, Germany). An equal volume of sample buffer was added to the concentrated media before loading on a 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) gel impregnated with 0.1% gelatin. After electrophoresis, the gel was rinsed with renaturing buffer for 1 hour and incubated in a developing buffer overnight at 37℃. After incubation, the gel was stained with 0.05% Coomassie brilliant blue R-250 (Amresco, Cleveland, OH, USA) and de-stained. MMP-2 and MMP-9 were detected as transparent bands. The HT1080 cell line was used as a positive control.
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7

SLP Isolation and Western Blot Analysis

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Purified SLPs were boiled in SDS-PAGE sample buffer for 10 min and subjected to 10% SDS-PAGE. The gel was stained with Coomassie Brilliant Blue R-250 (Amresco) for visualization of SLPs. In addition, the gel was transferred onto polyvinylidene difluoride membranes (PVDF, Millipore, Billerica, MA, USA). The membranes were blocked with TBST containing 5% skim milk for 1 h and then incubated with anti-SLPs antibody followed by incubation with HRP-conjugated secondary antibodies (Millipore) for 1 h. The proteins of interest were detected using ECL western blotting detection reagents (GE Healthcare, Chicago, IL, USA), and were visualized using Azure c400 system and AzureSpot Analysis Software (Azure Biosystems; Dublin, CA, USA) according to the manufacturer's instructions.
For monitoring caspase-1 and IL-1β maturation, total proteins were separated by SDS-PAGE, transferred to PVDF membranes, and probed with antibodies against IL-1β (R&D system, Minneapolis, MN, USA), precursor and p10 subunit of caspase-1 (Abcam, Cambridge, United Kingdom) and β-actin (Sigma-Aldrich, St. Louis, Missouri, USA). The expression of low-molecular-weight (LMW) surface layer proteins in the cell culture supernatant was also detected using rabbit anti-LMW SLP BAA 1805 serum (customized by Abnova, Taipei, Taiwan).
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8

Affinity Purification of Fusion Proteins

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The fusion proteins were purified as described previously (Mao et al., 2014). Then, equivalent protein of His‐MoBre2FL and GST‐MoSdc1FL fusion proteins were added to a 1.5 ml centrifuge tube with BC100 (20 mM Tris.HCl [pH 8.0], 100 mM NaCl, 1 mM EDTA, 0.1% NP‐40) to 400 μl. Next, 40 μl glutathione‐sepharose 4B (GE Healthcare) was added to the solution. The tubes were then rotated and incubated for 4 hr at 4 °C to pull down GST‐tagged fusion proteins. This was followed by four washes with BC500 (20 mM Tris.HCl [pH 8.0], 500 mM NaCl, 1 mM EDTA, 0.1% NP‐40). The beads were boiled in SDS loading buffer for 10 min, centrifuged at 1,575 × g at 4 °C for 5 min, and then the supernatant was separated by 13% denaturing SDS‐PAGE. Finally, the gel was stained with Coomassie Brilliant Blue R‐250 (AMRESCO) and western blotting using anti‐His (Transgen Biotech, HT501) and anti‐GST antibodies (Transgen Biotech, HT601) (Mao et al., 2017) for observation.
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9

Protein Visualization and Quantification

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Proteins were separated and visualized on a 10% Tris-tricine gel stained with Coomassie Brilliant Blue R-250 (AMRESCO, Solon, OH). The expression, solubility, and purity were quantified using ImageJ software (http://imagej.nih.gov/ij). For silver staining, the polyacrylamide gel was placed into Fixative Enhancer Solution (Bio-Rad Laboratories, Hercules, CA) for 20 min and then rinsed with distilled water to increase the sensitivity and contrast of the staining. Staining and developing were performed using a mixture of silver complex solution, reduction moderator solution, and image development reagent (Bio-Rad Laboratories, Hercules, CA). The reaction was stopped by the addition of 5% acetic acid.
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10

Methyltransferase Activity Assay

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LMNB1‐CT and EHMT1‐SET/EHMT2‐SET were incubated along with 50 μM SAM in methyltransferase assay buffer in a 50 μl reaction at RT for 1 h. 12 μl of 4x‐SDS–PAGE loading dye was added to all the tubes to stop the reaction; samples were heated at 95°C for 8 min and resolved by 10% SDS–PAGE. The reaction was split into two, one was used for Western blot to probe with Anti‐Methyl‐K antibody and the other half was used to stain with Coomassie Blue stain (Coomassie Brilliant Blue R‐250, Amresco).
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