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8 protocols using p perk sc 32577

1

Redox-Sensitive Protein Regulation Protocol

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The chemical (2S, 3S)-1,4-Bis-sulfanylbutane-2,3-diol (DTT, CAS No. 3483-12-3) was obtained from Sigma; it is a strong reductant with the chemical formula C4H10O2S2 and MW of 154.25 g/mol. Its reducibility is largely due to the conformational stability after oxidation (containing disulfide bond). In this experiment, 3.09 g DTT powder was completely dissolved in 20 mL 0.01 M sodium acetate to obtain 1 M DTT stock solution, which was packed and stored at −20 °C before use.
Specific antibody against Nrf1 was made in our own laboratory [25 (link)]. All nine distinct antibodies against Nrf2 (ab62352), GCLC (ab207777), GCLM (ab126704), HO-1 (ab52947), GPX1 (ab108427), XBP1 (AB109221), ATF4 (ab184909), ATF6 (ab227830) and P4HB (ab137180) were obtained from Abcam (Cambridge, UK). The first three antibodies against TALDO (D623398), GSR (D220726) and NQO1 (D26104) were purchased from Sangon Biotech (Shanghai, China). The second three antibodies against BIP (bs-1219R), Chop (bs-20669R) and pIRE1 (bs-16698R) were from Bioss (Beijing, China). The third three antibodies against PSMB5 (A1975), PSMB6 (A4054), PSMB7 (A14771) were from ABclonal (Wuhan, China). Lastly, three antibodies to p-eIF2α (#5199) were from Cell Signaling Technology (Boston, MA, USA), p-PERK (sc-32577) from Santa CruZ (Santacruz, CA, USA), and β-actin (TA-09) from ZSGB-BIO (Beijing, China), respectively.
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2

Investigating ER Stress Signaling Pathways

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Angiotensin II (Ang II) and tunicamycin (TM) were obtained from Sigma–Aldrich (St. Louis, MO). Simvastatin was purchased from Cayman Chemical Company (Ann Arbor, MI), and atorvastatin was purchased from Pfizer (New York City, NY, USA). Antibodies against β-actin(BM0627), IL-6 (BA4339-2), IL-8(BA0996), IL-1β(BA2782), MCP-1 (BA1843-2), CD68(BA3638) were from Boster Biological Technology(Pleasanton, CA). Protein kinase RNA (PKR)-like ER kinase (PERK)(sc-32577) (H-300), phosphorylated protein kinase RNA (PKR)-like ER kinase (p-PERK) (sc-32577), inositol-requiring protein-1α (IRE1α) (sc-20790), glucose-regulated protein 78 (GRP78) (sc-13968), ER marker KDEL(sc-58774), phosphorylated α-subunit of eukaryotic translation initiation factor-2 (p-EIF2α)(FL-315), and Caspase12(sc-21747) were purchased from Santa Cruz Biotechnology (Santa Cruz, CA). Activating transcription factor-6α (ATF6α)(24169-1-AP) was from Proteintech Group, Inc (Chicago, USA). Antibody for CHOP(L63F7) was purchased Cell Signaling Technology (Beverly, MA). Dulbecco's modified Eagle's medium (DMEM) and fetal bovine serum (FBS) were obtained from Life Technologies (Grand Island, NY). Horseradish peroxidase-conjugated secondary antibodies were from Thermo Fisher Scientific (Rockford, IL). All other chemicals were purchased from Sigma-Aldrich (St. Louis, MO) unless otherwise indicated.
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3

Western Blot Analysis of Cell Signaling

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SDS-PAGE and western blotting were performed as previously described. [28 (link)] Briefly, cell lysates were generated using RIPA buffer containing protease phosphatase inhibitor cocktail (Pierce). Cell lysates were subject to centrifugation and the protein content in supernatants was determined using the BCA Protein Assay Kit (Pierce). Proteins were resolved by 7.5%-12% SDS-PAGE, transferred to PVDF membrane and blocked with 5% bovine serum albumin. Proteins were detected with the following antibodies; cleaved Caspase 3 (MAB835) and hGRP-78 (MAB4846) from R&D Systems, BAX (ab32503) and Bcl-2 (ab7973) from Abcam, GAPDH (G8795) from Sigma Aldrich, p-PERK (sc-32577) from Santa Cruz Biotechnology, and Caspase-3 (9662), IRE-1 (3294S), CHOP (2895S), p-eIF2α (3597s), eIF2 (9722), PERK (3192S), p-P38 (9211), P38 (9212), p-Erk1/2 (9101), Erk (9102), p-SAPK-JNK (9251), and SAPK/JNK (9252) from Cell Signaling. ATF6 (MA5-16172) was purchased from Thermo Fisher Scientific. Blots were incubated with HRP-conjugated secondary antibodies followed by enhanced chemiluminescence (ECL) detection. Results were quantified by densitometry of digitized images using ImageJ software (NIH, Bethesda, MD, ver.1.43) and expressed as a ratio to a GAPDH loading control.
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4

Immunoblotting and Immunostaining Protocols

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For immunoblotting, we obtained S6K (sc-230), PERK (sc-13073) and p-PERK (sc-32577) antibodies from Santa Cruz Biotechnology, Dallas, TX, human Sestrin2 (10795-1-AP) antibody from Proteintech, Chicago, IL, BiP (3177), CHOP (2895), p-Thr389 S6K (9234), p-Ser235/236 S6 (2211), S6 (2317), p-Thr37/46 4E-BP (2855), 4E-BP (9452), p-Ser473 AKT (9273) and AKT (4691) antibodies from Cell Signaling Technology, Danverse, MA, actin (JLA20) antibody from Developmental Studies Hybridoma Bank (DSHB, Iowa city, IA), and tubulin (T5168) antibody from Sigma, St. Louis, MO. Mouse Sestrin2 antibody was described (Ro et al, 2014b (link)). For immunostaining, we obtained p53 (sc-6243), PCNA (sc-7907), β-catenin (sc-59737), CHOP (sc-575) from Santa Cruz Biotechnology, F4/80 (mf48000) from Invitrogen, Carlsbad, CA, BiP (3177), γ-H2AX (2577), p-Ser235/236 S6 (2211) and p-Thr37/46 4E-BP (2855) from Cell Signaling Technology. Azoxymethane (AOM), dextran sulfate sodium (DSS), rapamycin, 5-fluorouracil (5-FU) and irinotecan (CPT-11) were from Sigma.
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5

Endoplasmic Reticulum Stress Induction

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NaF (S6776) was purchased from Sigma Aldrich, UK. Lymphocyte separation medium (DKW33-R0100) were supplied by Dakewe Biotech Company, China. RIPA lysis buffer (P0013C), BCA Protein Assay Kit (P0012), Cell Counting Kit-8 (CCK-8) (C0038) and Annexin V-PE/7-AAD Apoptosis Detection Kit I (559763) were obtained from BD, USA. RPMI 1640 (11875119) and fetal bovine serum (16000044) were supplied by Gibco, UK. The mouse Bip (3177T), GRP94 (20292T), CHOP (2895P), ATF6 (65880S), p-JNK (4668T), p-eIF2a (3398P), ATF4 (11815S), cleaved caspase-12 (ab18766) antibodies, mouse IgG (7076P2) and rabbit IgG (7074P2) were obtained from Cell Signaling Technology, UK. p-PERK (sc-32577) were obtained from Santa Cruz Biotechnology, USA, p-IRE1 (ab48187) were obtained from Abcam, UK.
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6

Methamphetamine-Induced ER Stress Response

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DL-methamphetamine (purity > 95%, supplied by Public Security Bureau of Beijing Municipality) was dissolved in a 0.9% saline solution. The ER stress inhibitors salubrinal (SB, SML-0951) and sodium 4-phenylbutyric acid (PBA, ab141253) were from Sigma (United States) and Abcam (Cambridge, MA, United States), respectively. The NADPH oxidase inhibitor apocynin (ab120615) and ROS scavenger N-tert-butyl-α-phenylnitrone (NBP, RQ75L-QN) were obtained from Abcam and Tokyo Chemical Industry (Tokyo, Japan), respectively. Antibodies were obtained from the following sources: CD31 (ab28364), claudin5 (ab15106), Bip (ab21685), p-IRE1 (ab48187), IRE1 (ab37073), CHOP (ab11419), and cytochrome c (ab13575) were from Abcam; occludin (13409-1-AP), bcl-2 (12789-1-AP), and bax (50599-2-1g) were from Proteintech (Chicago, IL, United States); ATF6 (BS6476), GAPDH (AP0066), and COX IV (BS2186) were from Bioworld (St. Louis, MO, United States); p-PERK (sc-32577) and PERK (sc-9477) were from Santa Cruz (Dallas, TX, United States).
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7

Geniposide Modulates TGF-β Signaling

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Geniposide (≥98% purity, as detected by high-performance liquid chromatography analysis) was purchased from Shanghai Winherb Medical Co. (Shanghai, China). TGF-β (T7039) was obtained from Sigma-Aldrich (St. Louis, MO, United States). ISO was purchased from Sigma-Aldrich Co. EX-527 was purchased from MedchemExpress (Sollentuna, Sweden). Antibodies against the following proteins were purchased from Abcam: TGF-β1 (ab66043), SIRT1 (ab110304), gp91 (ab80508), 4-hydroxynonenal (4HNE) (ab46545), thioredoxin2 (ab26320), α-SMA (ab5694), GRP78 (ab955), XBP-1 (ab37152), TGF beta Receptor I (ab31013), TGF beta Receptor II (ab61213), and acetyl-lysine (ab80178). Antibodies against the following proteins were purchased from Cell Signaling Technology: phosphorylated (P-)Smad3 (8769), total (T-)Smad3 (9513s), and GAPDH (2118). The antibodies against P-PERK (sc-32577) and T-PERK (sc13073) were purchased from Santa Cruz Biotechnology. The antibody against ATF6 (15794-1-AP) was purchased from Proteintech Group. The secondary antibodies used in this study were acquired from LI-COR Biosciences (used at 1:10,000 dilution). The GT VisionTM+Detection System/Mo&Rb reagent for immunohistochemistry was obtained from Gene Technology (Shanghai, China). The Alexa Fluor 488-conjugated goat anti-rabbit secondary antibody for immunofluorescence was purchased from LI-COR Biosciences.
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8

Western Blot Analysis of Colon Protein Markers

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The segments of mouse colon and cells were collected, and Western blot analyses were performed as previously described.[24] The ECL reagents were used for detection. Image analysis was conducted using ImageJ software (Fiji, ImageJ).
For primary antibodies, anti‐eukaryotic initiation factor 2α (eIF2α)(#5324), anti‐phosphorylation of eukaryotic initiation factor 2α (p‐eIF2α) (#3398), anti‐autophagy related gene 7 (Atg7) (#8558), anti‐microtubule‐associated protein light chain 3II (LC3II)(#2775), anti‐actin (#4970), and secondary antibodies (Anti‐rabbit IgG, #7074 and Anti‐mouse IgG, #7076) were purchased from CST (MA, USA); anti‐activating transcription factor 4 (ATF4) (sc‐390063) and anti‐phosphorylation of protein kinase R‐like ER kinase (p‐PERK)(sc‐32577) were purchased from Santa Cruz (CA, USA); anti‐glucose‐regulated protein 78 (GRP78) (66574‐1‐lg) and anti‐protein kinase R‐like ER kinase (PERK)(24390‐1‐AP) were purchased from Protein Tech (IL, USA), anti‐Beclin1 (ab62557) was purchased from Abcam (Cambridge, UK).
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