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Anti tnks1 2

Manufactured by Santa Cruz Biotechnology

Anti-TNKS1/2 is a laboratory reagent designed for use in research applications. It functions as an antibody that specifically binds to and detects the TNKS1 and TNKS2 proteins. TNKS1 and TNKS2 are enzymes involved in various cellular processes. The Anti-TNKS1/2 antibody can be used in techniques such as Western blotting, immunoprecipitation, and immunohistochemistry to study the expression and localization of these proteins.

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7 protocols using anti tnks1 2

1

Western Blot Analysis of Transfected HEK293T Cells

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Total protein lysates derived from transfected HEK293T cells were used for WB experiments using the human specific antibodies anti-TNKS1/2 (1:1000 dilutions; Santa Cruz Biotechnology; sc-8337); anti-USP25 (1:1000 dilution; Abcam, ab187156); anti-Flag (1:1000 dilutions; Sigma-Aldrich, F7425); and anti-Tubulin (1:5000 dilutions; Sigma, T5168). Membranes were developed with chemiluminescence substrate Pierce® ELC Western Blotting Substrate (Thermo Fisher Scientific, South Logan, UT, USA), and visualized on a LAS4000 device (Fujifilm, Tokyo, Japan). Protein quantification was done with the Image Gauge software (Fujifilm).
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2

Protein Extraction and Immunoblotting Protocol

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200.000 cells were seeded in 35mm dishes and treated for the indicated times and conditions. Upon collection, cells were washed in 1ml cold PBS and scrapped off into 150ul RIPA buffer, incubated 15min on ice and centrifuged at 13.000rpm to collect protein lysates. 25ug per lane were loaded; antibodies used and dilutions were anti-Axin1 (CST, #2087), anti-Tnks1/2 (Santa Cruz, #sc-365897), anti-actin-HRP (Abcam, #ab49900), Anti-alpha-Tubulin (Millipore Sigma, #CP06), anti-CyclinD1 (Santa Cruz, #sc-450), anti-CDK4 (Santa Cruz, #sc-56277), anti-EGFR (Santa Cruz, #sc-373746) and anti-CDK6 (CST, #13331T).
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3

Western Blot Analysis of Wnt Pathway Proteins

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HEK293T cells were cultured in DMEM (Gibco) with 10% (v/v) FBS (Gibco) and 1% penicillin/streptomycin. DLD-1, SW480, and HCT116 cells were maintained in RPMI1640 supplemented with 10% (v/v) FBS and 1% penicillin/streptomycin. Cells were grown in a 37°C humidified incubator containing 5% CO2.
The commercial antibodies used for Western blotting analysis included the following: anti-USP25 (1:1000 dilution; Abcam, ab187156), anti-TNKS1/2 (1:1000 dilution; Santa Cruz Biotechnology, sc-8337), anti-Axin1 (1:1000 dilution; Cell Signaling Technology, no. 2087), anti-β-catenin (1:1000 dilution; Cell Signaling Technology, no. 9562), anti-Axin2 (1:1000 dilution; Cell Signaling Technology, no. 2151), anti-Flag (1:1000 dilution; Cell Signaling Technology, no. 2368), anti-Myc (1:1000 dilution; Proteintech, 16286-1-AP), anti-HA (1:1000 dilution; Proteintech, 51064-2-AP), and anti-Tubulin (1:10000 dilution; MBL, PM054). anti-Flag affinity gel (B23101) and anti-HA affinity gel (B23301) were from Biotool, CHX (no. 01810) was from Sigma, and XAV-939 (no. S1180) and MG132 (S2619) were from Selleckchem.
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4

Intestinal Organoid Protein Analysis

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Small intestine organoids were grown in 300μl of Matrigel in one well of a 6-well dish for 3 days post-passage. Organoids were then recovered from the Matrigel using Cell Recovery Solution(ref). Organoid pellets were lysed in 30 μl RIPA buffer. Antibodies used for Western blot were: anti-Apc (Millipore, #5535), anti-Axin1 (CST, #2087), anti-non-phosphorylated β-catenin (CST,), anti-phospho-β-catenin S33/S37/T41 (CST, #9561), total β-catenin (CST, #8480), anti-GSK3 (CST, #9832), anti-actin-HRP (Abcam, #ab49900), anti-Tnks1/2 (Santa Cruz, # sc-365897), anti-GFP (Abcam, #ab13970), Anti-α-Tubulin (Millipore Sigma, # CP06).
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5

TNKS-Fc Fusion Protein Production

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The entire coding human TNKS cDNA sequence was fused to the IgG Fc domain by ligating into the pcDNA3 EK FC vector using flanking restriction sites introduced by PCR. Human TNKS-FLAG DNA constructs harboring various mutations were engineered using site-directed mutagenesis. HEK293 or COS1 cells were transfected with the corresponding cDNA construct using Effectene (Qiagen) according to the manufacturers protocol. To chemically inhibit TNKS, cells were treated with the corresponding inhibitor for 24 hours. For immunoblotting, cells were lysed in 1X protein sample loading buffer diluted from Biorad 4X Laemmli protein sample buffer (#1610747), and proteins were separated on SDS-PAGE. For immunoprecipitation or IgG pull-down studies, cleared lysates were mixed with Protein A agarose beads in the presence or absence of 2 μg of desired antibody and rotated for 4 hours at 4°C. Beads were then washed three times with lysis buffer (1% NP40 in PBS). Bound proteins were eluted using 2x protein sample loading buffer and separated on SDS-PAGE. Antibodies were acquired from the following sources: anti-FLAG (Sigma, #A2220), anti-TNKS1/2 (Santa Cruz Biotechnology, #sc-8337), anti-NPT (Millipore, #06-747), and anti-ACTIN (Sigma, #A1978).
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6

Ectopic Expression of Flag-USP25 in HEK293T Cells

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The HEK293T cell line (CRL-1573; ATCC) was used for ectopic expression of Flag-USP25 and its mutants. HEK293T cells were cultured in Dulbecco's modified Eagle's medium (Sigma-Aldrich, St Louis, MO, USA), supplemented with 10% (v v−1) fetal bovine serum, 2μM l-glutamine, and 100 U mL−1 penicillin/streptomycin. Cells were grown in a 37 °C humidified incubator containing 5% CO2. The commercial antibodies used for western blotting (WB) analysis included the following: anti-TNKS1/2 (1:1000 dilutions; Santa Cruz Biotechnology; sc-8337); anti-USP25 (1:1000 dilution; Abcam, ab187156); anti-Flag (1:1000 dilutions; Sigma-Aldrich, F7425); and anti-Tubulin (1:5000 dilutions; Sigma, T5168), anti-Flag M2 affinity gel (Sigma-Aldrich, no. A2220). CHX (Sigma-Aldrich, no. 01810) was added to the cell culture medium in a final concentration of 100 μg mL−1 and cells were collected at the indicated times (0, 3, and 6 h) for WB. Bortezomib (Jansen Pharmaceuticals) was added to the cell culture medium in a final concentration of 0.5 μM and cells were collected after 6 h for WB.
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7

PGC-1α PARylation Interaction Profiling

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Immunoprecipitation was performed with muscle lysate of normal ICR mice as described [24 (link)]. The antibodies used are listed in Table S2.
Duolink in situ proximity ligation assay (PLA) was carried out according to the manufacturer’s instructions (Sigma-Aldrich, St. Louis, MO, USA). Briefly, antigen retrieval of deparaffinized 4 µm paraffin sections was carried out with 10 mM citrate buffer, pH 6. Frozen sections of WAT (25 µm) were fixed with 2% PFA. Muscle and WAT sections were permeabilized with 0.1% or 0.3% Triton-X100 for 30 or 15 min at RT, respectively. Sections were blocked with CAS-block (Invitrogen) for 1 h at RT and incubated O/N at +4 °C with primary antibodies diluted in ChemMate™ (DakoCytomation, Glostrup, Denmark). Primary antibodies used are listed in Table S2. Images were captured using Zeiss Axioplan2 microscope (Carl Zeiss Microscopy, Thornwood, NY, USA) and quantified with the Duolink Image Tool software (Olink Bioscience, Uppsala, Sweden).
Pull-down assay with WWE Affinity Resin Kit (Tulip Biolabs, West Point, PA, USA) was performed according to the manufacturer’s instruction. PARylated PGC-1α and TNKS1 were detected by immunoblotting the affinity precipitates with anti-PGC-1α (EMD Millipore) and anti-TNKS1/2 (Santa Cruz Biotechnology) IgGs.
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