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11 protocols using claudin 4

1

Tight Junction Protein Analysis in Organoids

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Organoids were analysed for TJ expression by Western blot analysis after treatment with LPS or EcN. Organoids were homogenized with a tissue homogenisator (Ultra Turrax, IKA®-Werke GmbH & Co. KG). Proteins were extracted and separated by sodium dodecyl sulfate polyacrylamide gel electrophoresis, transferred to a nitrocellulose membrane, and immunoblotted using primary antibodies against occludin, claudin8, zonula occludens-1 (Invitrogen), and claudin4 (Abcam). Immunoblotting for GAPDH (GenScript USA Inc., NJ, USA) was used as an internal control. After incubation with the secondary antibody (donkey anti-rabbit IgG (HRP); Abcam), the membrane was developed with a chemiluminescence solution (Bio-Rad Laboratories, Hercules, California, USA) and images were acquired using a ChemiDoc™ Touch Imaging System (Bio-Rad). Blot analysis was performed via ImageJ software (open source).
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2

Immunofluorescent Labeling of Tight Junction Proteins in Mouse Lung Sections

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Mouse lung sections were made as previously described.25 (link) The sections were blocked for non-specific binding with 1.5% goat serum and incubated with the claudin-4 (1:400, Abcam Inc., Cambridge, MA, USA) +/- TJ protein 1 (TJP1 aka zonula occludens-1, ZO-1) (1:1,000, Santa Cruz Biotech, Santa Cruz, CA, USA), followed by Alexa Fluor 488-conjugated Donkey polyclonal anti-Rabbit IgG (1:1,000, Abcam Inc.) + PE-conjugated goat anti-mouse antibody (1:2,000, BD Bioscience). Nuclei were counterstained with 4′,6-diamidino-2-phenylindole (DAPI) (1:1,000, Invitrogen). Sections were observed using a confocal laser scanning microscope (LSM510 META), and images were generated using a Zeiss LSM image browser (Carl Zeiss Microsystems, Thornwood, NY, USA).
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3

Immunofluorescence and Immunohistochemistry of Colon Tissues

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Immunofluorescence staining of paraffin-embedded sections of colonic tissues was performed in accordance with routine procedures. Slides were incubated with the primary rabbit anti-Foxp3 antibody (1 : 400, Abcam, USA) overnight at 4°C, followed by FITC-labeled secondary goat anti-rabbit IgG antibody (Jackson ImmunoResearch, USA). The sections were then covered with anti-fade mounting medium (Beyotime, China) and were visualized by fluorescence microscopy. Immunohistochemical staining for TJs (JAM-1, 1 : 100, Abcam; claudin-4, 1 : 200, Abcam; occludin, 1 : 100, Proteintech) was performed as described previously [19 (link)].
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4

Immunofluorescence Analysis of EV-A71/CV-A16 Infection in 16HBE Cells

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16HBE cells were seeded onto poly-L-lysine-coated coverslips (Solarbio, China) and treated as previously described. At the indicated time, the cells were washed in PBS, fixed with 4% PFA (Solarbio, China) and permeabilized with 1% Triton X-100 in PBS. The cells were blocked with 5% BSA at room temperature for 1 h and then incubated with the primary antibodies in blocking solution against EV-A71/CV-A16-VP1 (1:1,000, Millipore, USA), Nectin1 (1:100, Novusbio, USA), Claudin4 (1:200, Abcam, USA), E-cadherin (1:500, Abcam, USA) and ZO-1 (1:200, Abcam, USA) overnight at 4°C. Next, cells were washed with PBS three times and then incubated with Alexa Fluor 594-conjugated donkey anti-rabbit IgG (Abcam, USA), Alexa Fluor 647-conjugated donkey anti-mouse IgG (Millipore, USA) or Alexa Fluor 488-conjugated donkey anti-rabbit IgG (Biolegend, USA) for 1 h at room temperature. The nuclei were counterstained with 4′, 6-diamidino-2-phenylindole (DAPI, 1:4,000, Beyotime, China). Slides were mounted with antifade reagent (Solarbio, China) and observed using a laser-scanning confocal microscope (Leica, Germany). The images were captured and processed using Adobe Photoshop 7.0 software.
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5

Transwell Assay for Epithelial Barrier

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Minimum Essential Medium (MEM) with Earle’s Balanced Salts, fetal bovine serum (FBS), nonessential amino acid (NEAA), antibiotics (penicillin/streptomycin solution), and sinapic acid (3,5-dimethoxy-4-hydroxycinnamic acid) were obtained from Thermo Fisher Scientific (Logan, UT, United States). Twelve-well Transwell and Hanks’ Balanced Salt Solution (HBSS) were purchased from Welgene (Gyeongsan, Gyeongsangbuk-do, Republic of Korea). Antibodies against p65, p-p65, IKKα/β, p-IKKα/β, IκBα, p-IκBα, MLCK, p-MLC, E-cadherin, MKK4/7, p-MKK4/7, P38 MAPK, p-P38 MAPK. SAPK/JNK, p-SAPK/JNK, ERK, p-ERK, and α/β-Tubulin were purchased from Cell Signaling Technology (Danvers, MA, United States). Antibodies against lamin B1, ZO-1, occludin, claudin-4, claudin-2, ATF-2, and p-ATF2 were purchased from Abcam (Cambridge, Cambridgeshire, United Kingdom). The primary antibody against β-actin was purchased from Santa Cruz Biotech (Santa Cruz, CA, United States). Lipopolysaccharide (LPS) derived from Samonella enterica serotype typhimurium was purchased from Sigma-Aldrich (St. Louis, MO, United States), and tumor necrosis factor (TNF)-α was purchased from NKMAX (Seongnam, Gyeonggi-do, Republic of Korea).
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6

Protein Extraction and Western Blotting

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Protein was extracted from tissues with commercial lysis buffer. Western blotting was performed as described previously. 17 Primary antibodies against zonula occluden (ZO)-1 (Invitrogen, Carlsbad, California, USA), ZO-2 (Abcam, Cambridge, UK), occludin (Invitrogen), claudin-4 (Abcam) and glyceraldehyde 3-phosphate dehydrogenase (GAPDH, Invitrogen) were used. Faecal albumin and urinary protein concentrations were determined with a mouse albumin ELISA kit (Bethyl Labs, Montgomery, Alabama, USA) according to the manufacturer's instructions. The endotoxin level was measured with a commercial kit (Bio-Swamp, Beijing, China).
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7

Western Blot Analysis of Protein Expressions

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Cell lysates were prepared with RIPA buffer supplemented with protease inhibitor cocktail (Beyotime, Shanghai, China). An equal amount of protein from each sample was loaded onto 10% or 15% SDS-PAGE gel and then blotted onto nitrocellulose membranes. The membranes were blocked with 5% skim milk and then probed with primary antibodies at 4 °C overnight. After incubation with horseradish peroxidase-labeled secondary antibody (Beyotime) for 1 h at room temperature, the membranes were developed with enhanced chemiluminescence reagents (Thermo Fisher). The sources of antibodies were as follows: antibodies against CXCL13, CXCR5, ZO-1, occludin, and claudin-4 were purchased from Abcam; antibodies against p38, phosphorylated p38 (p-p38), and GAPDH were obtained from Cell Signaling Technology (Danvers, MA, USA). GAPDH levels were used as the loading control.
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8

Western Blot Analysis of Tight Junction and Adhesion Proteins

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The ipsilateral cortex around the infarct area and the colon tissue were collected and stored at −80°C until further use. The brain tissues were homogenized in radioimmunoprecipitation assay (RIPA) lysis buffer (Beyotime Biotechnology, China) containing the protease inhibitor phenylmethylsulfonyl fluoride (PMSF; Beyotime Biotechnology, China) using a handheld homogenizer and incubated on ice for 20 min. The lysates were centrifuged at 12,000 × g for 20 min at 4°C, and the supernatants were transferred to fresh tubes. The protein samples were resolved on a 12% or 10% SDS-PAGE gel and electrotransferred onto a polyvinylidene difluoride (PVDF) membrane. The membrane was blocked with 5% nonfat milk at room temperature for 1 h and then incubated with primary antibodies against ZO-1 (1:1,000; Abcam), occludin (1:1,000; Abcam), claudin-4 (1: 1,000; Abcam), ICAM-1 (1:1,000; Abcam), VCAM-1 (1:1,000; Abcam), MMP-9 (1:1,000; Abcam), and β-actin (1:5,000; Abcam) at 4°C overnight. The membrane was washed with Tris-buffered saline (TBS) containing 0.1% Tween 20 and incubated with a horseradish peroxidase (HRP)-conjugated goat anti-rabbit secondary antibody. The membrane was then visualized with an enhanced chemiluminescence system (Thermo Scientific, Rockford, IL). The band intensity was assessed using Image Lab software.
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9

Intestinal Epithelial Tight Junction and Apoptosis Analysis

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The enterocytes of the small intestine from each animal were homogenized with RIPA buffer to prepare gut extracts. Protein concentrations were determined via the Bradford protein assay, and equal amounts of protein from different samples were separated by 10% SDS/PAGE and transferred to nitrocellulose membranes. These membranes were probed with the respective primary antibody against ZO-1 (1:1000 dilution; Abcam), Occludin (1:1000 dilution; Abcam), Claudin-1 (1:1000 dilution; Abcam), Claudin-3 (1:1000 dilution; Abcam), Claudin-4 (1:1000 dilution; Abcam), β-catenin (1:1000 dilution; Abcam), E-cadherin (1:1000 dilution; Cell Signaling), Plakoglobin (1:200 dilution; Santa Cruz), ALDH2 (1:1000 dilution; Abcam), CYP2E1 (1:1000 dilution; Abcam), iNOS (1:1000 dilution; Abcam), Bax (1:1000 dilution; Cell Signaling), Cleaved (active)-caspase-3 (1:1000 dilution; Cell Signaling), or GAPDH (1:5000 dilution; Cell Signaling). Horseradish peroxidase (HRP)-conjugated goat anti-rabbit or anti-mouse IgG (1:5000 dilution; Cell Signaling) was used as the secondary antibody. Relative protein images were assessed by enhanced chemiluminescence (ECL) substrates, and their immunoreactive band intensities were quantified by densitometry using ImageJ software (National Institutes of Health).
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10

Western Blot Analysis of Tight Junction and Adhesion Proteins

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The ipsilateral cortex around the infarct area and the colon tissue were collected and stored at −80°C until further use. The brain tissues were homogenized in radioimmunoprecipitation assay (RIPA) lysis buffer (Beyotime Biotechnology, China) containing the protease inhibitor phenylmethylsulfonyl fluoride (PMSF; Beyotime Biotechnology, China) using a handheld homogenizer and incubated on ice for 20 min. The lysates were centrifuged at 12,000 × g for 20 min at 4°C, and the supernatants were transferred to fresh tubes. The protein samples were resolved on a 12% or 10% SDS-PAGE gel and electrotransferred onto a polyvinylidene difluoride (PVDF) membrane. The membrane was blocked with 5% nonfat milk at room temperature for 1 h and then incubated with primary antibodies against ZO-1 (1:1,000; Abcam), occludin (1:1,000; Abcam), claudin-4 (1: 1,000; Abcam), ICAM-1 (1:1,000; Abcam), VCAM-1 (1:1,000; Abcam), MMP-9 (1:1,000; Abcam), and β-actin (1:5,000; Abcam) at 4°C overnight. The membrane was washed with Tris-buffered saline (TBS) containing 0.1% Tween 20 and incubated with a horseradish peroxidase (HRP)-conjugated goat anti-rabbit secondary antibody. The membrane was then visualized with an enhanced chemiluminescence system (Thermo Scientific, Rockford, IL). The band intensity was assessed using Image Lab software.
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