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Evagreen 2x qpcr mastermix low rox

EvaGreen 2X qPCR MasterMix-Low ROX is a ready-to-use reaction mixture for quantitative real-time PCR (qPCR) applications. It contains EvaGreen dye, a fluorescent DNA-binding dye, and a low concentration of ROX passive reference dye. The master mix is optimized for sensitive and reliable qPCR performance.

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3 protocols using evagreen 2x qpcr mastermix low rox

1

Quantitative RT-PCR Analysis of Immune Transcripts

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Total RNA was extracted from spleens or aortas by the TRIzol Reagent (Ambion). 100 ng of spleen RNA and 40 ng aorta RNA were quantified with NanoDrop One (Thermo Scientific) and reverse transcribed using 5X All-In-One RT MasterMix (abm) preformed in Veriti 96-Well Thermal Cycler (Applied Biosystems). Quantitative real-time PCR was performed in 7500 Real-Time PCR (Applied Biosystems) using specific primers (synthesized by Sangon Biotech) and EvaGreen 2X qPCR MasterMix-Low ROX (abm). Reverse transcription and amplification conditions followed the reagent instructions. Data were analyzed via the 2-ΔΔCt method normalized to Gapdh. Sequences of primers were used as follows from 5′ to 3′ extremity:

Gapdh: AGGTCGGTGTGAACGGATTTG (F); TGTAGACCATGTAGTTGAGGTCA (R)

Stat3: CAATACCATTGACCTGCCGAT (F); GAGCGACTCAAACTGCCCT (R)

Stat5a: CGCCAGATGCAAGTGTTGTAT (F); TCCTGGGGATTATCCAAGTCAAT (R)

Jak2: TTGTGGTATTACGCCTGTGTATC (F); ATGCCTGGTTGACTCGTCTAT (R)

Socs3: ATGGTCACCCACAGCAAGTTT (F); TCCAGTAGAATCCGCTCTCCT (R)

Foxp3: CACCTATGCCACCCTTATCCG (F); CATGCGAGTAAACCAATGGTAGA (R)

Tgfb1: TGACGTCACTGGAGTTGTACGG (F); GGTTCATGTCATGGATGGTGC (R)

Cd80: ACCCCCAACATAACTGAGTCT (F); TTCCAACCAAGAGAAGCGAGG (R)

Cd86: AGTGATCGCCAACTTCAGTGAACC (F); GGTGACCTTGCTTAGACGTGCAG (R).

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2

Comprehensive RNA Extraction and Analysis

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Total RNA was extracted from tissue and cells using TRIzol (TianGen). 3 μg total RNA was subjected to reverse transcription reaction using EasyScript One-Step gDNA Removal and cDNA Synthesis SuperMix (TransGen). qRT-PCR analyses were performed using EvaGreen 2X qPCR MasterMix-Low ROX (ABM). For miRNA detection, cDNA was synthesized using miRNA cDNA Synthesis Kit (ABM) and then amplified using miRNA qPCR profiling kits (ABM). GAPDH is used as an internal reference for lncRNA and mRNA, and U6 is used as an internal reference for miRNA. The primer sequences used for qRT-PCR are shown in Table S3.
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3

Quantification of Dnmt Gene Expression

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TRIzol Reagent (Invitrogen) was used to extract total RNA from spleens or aortas. 100 ng/10µL of spleen or aorta RNA were quanti ed with NanoDrop One (Thermo Scienti c) and 5X All-In-One RT MasterMix (abm) was used for reverse transcription in Veriti 96-Well Thermal Cycler (Applied Biosystems). 7500 Real-Time PCR (Applied Biosystems) was used for qRT-PCR using speci c primers (synthesized by Sangon Biotech) and Eva Green 2X qPCR Master Mix-Low ROX (abm). Reverse transcription and ampli cation conditions followed the reagent instructions. Data were analyzed via the 2 -ΔΔCt method normalized to β-Actin. Sequences of primers were used as follows from 5' to 3' extremity:
i. β-Actin: GGCTGTATTCCCCTCCATCG (F); CCAGTTGGTAACAATGCCATGT (R);
ii. Dnmt1: ATCCTGTGAAAGAGAACCCTGT (F); CCGATGCGATAGGGCTCTG (R);
iii. Dnmt3b: AGCGGGTATGAGGAGTGCAT (F); GGGAGCATCCTTCGTGTCTG (R)
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