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4 protocols using hrp conjugated goat anti rabbit or anti mouse antibody

1

Comprehensive Antibody Panel for Autophagy

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Anti-S. pneumoniae (SSI), anti-GFP (Cell Signaling), anti-Myc (9B11, Cell Signaling), anti-Flag (Wako), anti-Galectin-3 (SINO BIOLOGICAL), anti-Calcoco2 (Proteintech for WB), anti-NDP52 (Gene Tex (GTX115378) for IF), anti-K63 linked Ub (clone Apu3, EMD Millipore), anti-LC3, p62, RFP, Atg16L1, ubiquitin (MBL), and anti-actin (Santa Cruz Biotechnology, Inc.) were used as primary antibodies. An HRP-conjugated goat anti-rabbit or anti-mouse antibodies (Jackson Laboratories) were used as secondary antibodies for immunoblotting. FITC- or TRITC-conjugated goat anti-rabbit or anti-mouse IgG antibodies (Sigma-Aldrich) were used as secondary antibodies for immunostaining. DAPI (4′,6-diamidino- 2-phenylindole, Sigma-Aldrich) was used for DNA staining. LysoTracker DND-99 was purchased from molecular probes. 10 µM rapamycin and 40 µM chloroquine (Selleck chemical), and 30 µM PYR-41 (UBPBio), and 10 mM 3-methyladenine (3-MA, Wako) were used as autophagy inducer or inhibitor. 300 µM Apocynin (Selleck), 10 mM GSH (Cayman Chemical), 2.5 mM NAC (Sigma-Aldrich) were used as antioxidative reagents. All other reagents were purchased from Sigma-Aldrich. All antibodies were used at 1:100 for immunofluorescence staining and 1:1000 for western blotting.
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2

Myosin IIIa Tail Protein Interactions

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HEK 293T cells were transfected in the presence of Lipofectamine 2000 (Invitrogen). One of the following combinations of constructs were used for transfection: (1) a cDNA encoding the GFP-tagged myosin IIIa tail alone (aa 1,107–1,621; accession number NM_148413); (2) a cDNA encoding the GFP-tagged myosin IIIa tail with a cDNA encoding the Flag-tagged MORN4 fragment (aa 1–146; accession number NM_198108); or (3) a cDNA encoding the GFP-tagged myosin IIIa tail with a cDNA encoding the Flag-tagged spectrin βII-R16 fragment, used as a negative control (C-terminal region of spectrin βII starting from the spectrin repeat 16; aa 1,914–2,364; accession number NP_008877.1). Protein extracts were incubated at 4°C for 2 h with a mouse monoclonal antibody directed against FlagM2 (Sigma-Aldrich) and then for 30 min with protein G–coated µMACS magnetic MicroBeads (Miltenyi Biotec). The bound proteins were denatured and eluted in 50 µl 2× NuPAGE containing 1× SDS. Immunoprecipitates were run on 4%–12% NuPAGE gels (Invitrogen) and subjected to Western blot analysis. HRP-conjugated goat anti–rabbit or anti–mouse antibodies (Jackson ImmunoResearch Laboratories) and the ECL chemiluminescence system (Pierce) were used for detection of the proteins.
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3

Western Blot Analysis of Yeast Proteins

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For Western blotting, yeast cultures were grown at 30°C in 3 ml of either SD plus glucose or SD plus galactose/raffinose and harvested. Equal numbers of cells were pelleted and resuspended in 0.2 ml of 0.1 M NaOH and incubated for 5 min at room temperature as described (Kushnirov, 2000 (link)). After centrifugation, the resulting cell pellet was resuspended in sample buffer and heated to ∼100°C for 3 min. Lysates were separated on a 10% SDS polyacrylamide gel and electroblotted to PVDF in 25 mM Tris and 192 mM glycine supplemented with 0.05% SDS and 10% methanol for 30 min. Rabbit anti–c-Myc polyclonal (GenScript) or anti–α-tubulin (Applied Biological Materials, Inc.) monoclonal antibodies and HRP-conjugated goat anti–rabbit or anti–mouse antibody (Jackson ImmunoResearch Laboratories) were used at 1:1,000, 1:1,000, 1:3,000, or 1:3,000, respectively. The chemiluminescence signal was acquired on an ImageQuant LAS 500 gel documentation system. Immunoblots were exposed without saturating the camera’s pixels.
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4

Protein Expression Profiling by Western Blot

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Total protein lysates extracted from samples were separated with 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), and transferred to a polyvinylidene fluoride (PVDF) membrane. The membrane was blocked with 3% bovine serum albumin BSA, followed by incubation with antibodies. The membrane was then incubated with secondary horseradish peroxidase (HRP)-conjugated goat anti-rabbit or anti-mouse antibody (Jackson ImmunoResearch Laboratories Inc., West Grove, PA, UAS), and visualized using Immobilon™ Western Chemiluminescent HRP substrate (Millipore, Burlington, MA, USA). Glyceraldehyde 3-phosphate dehydrogenase (GAPDH) was used as the loading control. The following primary antibodies were used: rabbit monoclonal anti-human FAP, BMI1, ABCG2, rabbit polyclonal anti-human LMO7, (ab207178, ab126783, ab108312; ab224113; Abcam, Cambridge, UK), rabbit monoclonal anti-human MDR1, NANOG, MPRIP, YAP, pS397YAP, rabbit polyclonal anti-human pS109YAP, KLF4, (13342, 4903, 14396, 14074,13619,46931, 4038; Cell Signaling Technology Inc., Danvers, MA, USA).
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