The largest database of trusted experimental protocols

13 protocols using anti h3cit

1

Isolation and Quantification of NETosis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Spleen neutrophils were isolated with Percoll (Solarbio, Beijing, China) gradients as described (23 (link)). NETs assay was performed as protocols published (24 (link)). Neutrophils were resuspended in RPMI-1640 containing 5-10% FBS and plated at 5×105 cells per well in 24-well plates (Thermo Fisher, Massachusetts, US). After incubation for 0.5-1 h, the cells were stimulated with PMA (8 μM, MedChemExpress, New Jersey, USA), ionomycin (10 μM, MedChemExpress, New Jersey, USA) or fecal microbiota (2×107 CFU), and the neutrophils were incubated for an additional 3 h to form NETs. Cells were stained with SYTOX green (1:1000, KeyGEN BioTech, Nanjing, China) for NETs quantification or, in some experiments, fixed in 2% paraformaldehyde, permeabilized, blocked, and stained with anti-H3cit (1:1000, Abcam, cat. no. ab5103) and anti-rabbit secondary antibodies (1:200, Servicebio, Wuhan, China). Images were acquired on an Axiovert 200 M wide-field fluorescence microscope (Nikon) with a coupled camera. The percentages of H3cit high cells and NETs were determined from five or six nonoverlapping fields per well, and the average was taken from 2-3 biological repetitions in every experiment.
+ Open protocol
+ Expand
2

Immunofluorescent and Immunohistochemical Analysis of Endometrial/Decidual Tissues

Check if the same lab product or an alternative is used in the 5 most similar protocols
For immunofluorescent staining, paraffin slides of endometrial/decidual tissues were processed and incubated with primary antibodies, including anti-CD15 (Abcam, USA; 1:1000) and anti-H3Cit (ab5103, USA; 1:1000), before being stained with fluorescent secondary antibodies and DAPI. The images were acquired with a fluorescence microscope (Olympus, Japan), and the number of endometrial/decidual samples with Nets positive was counted. Meanwhile, the paraffin slides were processed and stained with PAD4 antibody (Affinity, USA; 1:200) before being stained with secondary antibodies and chromogen substrate for immunohistochemical staining.
+ Open protocol
+ Expand
3

Western Blot Analysis of Protein Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein was isolated from IVC segments or thrombus using RIPA buffer (ThermoScientific, Rockford, Ill., USA) with dissolved cOmplete ULTRA mini tablets (Roche, Mannheim, Germany). Proteins were electrophoretically separated on NuPAGE 4–12% Bis Tris gels (Invitrogen, Carlsbad, Calif., USA) and blotted onto PVDF membranes (Millipore, Billerica, Mass., USA). Nonspecific binding was blocked with starting block (TBS) blocking buffer (ThermoScientific). Antibodies used included: anti-H3-Cit (1/500 dil., Abcam, Cambridge, Mass., USA), anti-cathepsin G (1/20,000 dil., Novus, Littleton, Colo., USA), anti-TFPI (2 μg/ml dil., Novus), anti-GAPDH (1/1,000 dil., Santa Cruz, Dallas, Tex., USA), anti-fibrin (clone 59D8, 1/1,000 dil., a gift from Dr. Charles Esmon, Oklahoma Medical Research Foundation, Oklahoma City) [25 (link)]. Immunoreactive bands were visualized with SuperSignal West Pico.
Chemiluminescent Substrate (ThermoScientific) and densitometry was performed using Image J software. Optical densities were summed and normalized to GAPDH.
+ Open protocol
+ Expand
4

Immunofluorescence Analysis of Histone Citrullination

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells after stimulation were fixed for 15 min at room temperature with 4% paraformaldehyde (Electron Microscopy Sciences) in Phosphate Buffer Saline (PBS) with 0.1% Triton X-100 (PBST). Cells were washed once for 5 min before being blocked for 30 min in blocking solution (2% BSA in PBST). Cells were stained overnight at 4°C with primary antibodies diluted in blocking solution, then washed before being incubated with Alexa Fluor 488 (1:1000, Invitrogen, catalog #: A-11008, lot #: 2140660) and DAPI (1:1000, Sigma) diluted in PBST for 2 h at room temperature. Cells were washed with PBST before being mounted in mounting media (Electron Microscopy Sciences). The following primary antibodies were used: anti-H3Cit (1:1000, abcam, catalog #: ab5103, lot #: GR262518-1) and anti-H4Cit3 (1:200, EMD Millipore, catalog #: 07–596, lot #: 3321101). Images were collected using a Zeiss Axiovert 200M Fluorescence/Live cell Imaging Microscope and processed with Adobe Photoshop and Illustrator.
+ Open protocol
+ Expand
5

Immunohistochemical Analysis of Immune Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
IHC staining was performed using the reported protocol.71 (link) Briefly, formaldehyde-fixed paraffin-embedded (FFPE) sections were dewaxed with methanol, subjected to antigen retrieval, blocked for 30 min, incubated with a 1:100 dilution of an anti-ARG1 antibody (Abcam, Cat# ab92274,RRID:AB_10563668) overnight at 4°C (anti-C1QA, Abcam, Cat# ab189922, RRID:AB_2894866, 1:100; anti-MPO, Abcam, Cat# ab9535, RRID:AB_307322, 1:100; anti-H3cit, Abcam, Cat# ab5103, RRID:AB_304752; anti-CCDC25, Santa Cruz, sc-515201,1:50), and then incubated with HRP-conjugated goat anti-mouse/rabbit IgG (ZSGB-BIO, Cat#PV-6002) at room temperature for 1 h. A DAB kit (ZSGB-BIO, Cat#ZLI-9019) was used for detection. The whole slide was scanned with an automatic digital slide scanning system (ZEISS, Axio Scan.Z1). The intensity of MPO and H3cit expression was measured with Image-Pro Plus software (RRID: SCR_007369).
+ Open protocol
+ Expand
6

Thrombi Processing and Antibody Detection

Check if the same lab product or an alternative is used in the 5 most similar protocols
Processing of thrombi and detection of primary antibodies is described in the Online Supplementary Methods. Membranes were probed with 2 μg/mL anti-Ly6G (BioXCell, West Lebanon, NH, USA), a 1,000-fold dilution of anti-β-actin (Abgent, San Diego, CA, USA), a 2,000-fold dilution of anti-PAD4 (Abcam), 1 μg/mL anti-H3Cit (Abcam) or 0.5 μg/mL anti-histone H3 (Abcam) primary antibody.
+ Open protocol
+ Expand
7

Immunofluorescence Analysis of Neutrophil Extracellular Traps

Check if the same lab product or an alternative is used in the 5 most similar protocols
The isolated PB-LDG, PB-NDG, and E/D-LDG were seeded on a poly-lysine-pretreated glass cover in a 48-well plate and stimulated with PMA (100 ng/mL, Sigma) for 4 hours. Then, the cells were fixed with 4% paraformaldehyde (Sigma) and incubated with primary antibodies, including anti-MPO (Abcam, USA; 1:1000) and anti-H3cit (Abcam; 1:1000), followed by staining with fluorescent secondary antibodies and DAPI. Images were obtained using a FluoView FV1000 confocal microscope (Olympus, Japan) and analyzed with Olympus FV10-ASW software (Olympus). The percentage of positively stained cells was calculated, and all sections were assessed independently by three blinded investigators (Ye Hx, Lan Li, and Jia Y), and the quantitative results were determined via consensus.
+ Open protocol
+ Expand
8

Phenotyping Extracellular Vesicles by Flow Cytometry

Check if the same lab product or an alternative is used in the 5 most similar protocols
To proceed to further analysis, PPP was first centrifuged at 2000 g for 20 min and thereafter at 13000 g for 2 min at room temperature. As previously described (24 (link), 25 (link)), the supernatant was incubated with monoclonal antibodies in order to phenotype EVs with antibodies against MPO, conjugated with PE (anti-MPO-PE, Beckman Coulter, Brea, CA, United States), tissue factor (CD142D, NJ, United States), citrullinated histone-3 (anti-H3Cit, Abcam, Cambridge, United Kingdom), and plasminogen (Abcam, Cambridge, United Kingdom). The samples were further fixed (Cellfix, BD, NJ, United States) in order to be evaluated by flow cytometry on a Beckman Gallios instrument (Beckman Coulter, Brea, CA, United States). The EVs gate was determined using Megamix beads (0.3–1.0 μm, BioCytex, Marseille). EVs were defined as particles <1 μm in diameter, according to MISEV guidelines defnition of a medium/large EVs (28 (link)). The measured levels of EVs are presented as EVs/μL plasma. The intra- and inter-assay coefficients of variation for MPO+EVs measurement were <9%, respectively.
+ Open protocol
+ Expand
9

Multimarker Immunofluorescence Staining Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tissue was snap frozen in optimal cutting temperature medium. 10-µm cryosections were fixed in 2% paraformaldehyde, permeabilized with 0.1% Triton, blocked in 3% BSA, and incubated with the following primary antibodies overnight at 4°C: anti-CD41 (MWReg30; BD), anti-Ly6G (clone 1A8; BioLegend), anti-H3Cit (Abcam), and anti–type I collagen (Abcam). After washing, sections were stained with the respective Alexa Fluor–conjugated antibodies (Alexa Fluor 488 donkey anti–rabbit IgG and Alexa Fluor 555 goat anti–rat IgG; BioLegend) and counterstained with Hoechst 33342 (Invitrogen). Images were acquired using a ZEISS Axiovert epifluorescence microscope.
+ Open protocol
+ Expand
10

Immunohistochemical Analysis of Inflammatory Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
For IHC, 4% paraformaldehyde or 10% formalin fixed, paraffin-embedded sections were baked at 60 °C for 1 h, deparaffinized in xylene, and rehydrated in a graded series of ethanol solutions. Antigens were unmasked by microwave heating the samples in 10 mmol/l sodium citrate buffer (pH 6.0) for 15 min (5 min, 3 times), and the reaction was quenched using hydrogen peroxide 3%. After washing with PBS, the samples were incubated with the following primary antibodies overnight at 4 °C: anti-MPO (No. 14569, CST), anti-CD3 (No. 85061, CST), anti-H3Cit (No. ab219407, abcam), anti-CXCL8 (No. 94407, CST), anti-COL1A1 (No. 72026, CST). Diaminobenzidine (DAB) was used as a detection system. Quantification analyses were performed using ImageJ software based on the percentage of positively stained cells and the staining intensity per field in representative sections.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!