The largest database of trusted experimental protocols

3 protocols using mm00475162 m1

1

Murine Kidney Gene Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Murine tissue was stored at −80°C. Total RNA was isolated from the kidneys using TRI Reagent (Sigma-Aldrich) according to a standard protocol. Thereafter, 2 μg of total RNA was reverse transcribed using SuperScript III Transcription Kit (Invitrogen, Carlsbad, CA, USA) and random primers (Invitrogen). Hprt gene was served as the housekeeping reference and was assessed using SYBR Green Master Mix (Invitrogen) and by the following primers: forward 5′ GCT TCC TCA GAC CGG TTT TTG C 3′ and reverse 5′ ATC GCT AAT CAC GAC GCT GGG ACT G 3′. For quantification of Foxp3, Gata3, Rorc, Tnfa, Tbx21, Ccr2, and CCr5, the gene expression assays Mm00475162_m1, Mm00484683_m1, Mm01261022, Mm00443258_m1, Mm00450960, Mm00438270, and Mm01216171 (Applied Biosystems, Foster City, DA, USA) were used, respectively.
Real-Time PCR was performed in duplicates on a CF96 real-time detection system (Bio-Rad, Vienna, Austria). The data was evaluated using the 2-ΔΔCT method.
+ Open protocol
+ Expand
2

Quantifying Cytokine Expression in AhR-Ligand Treated Mice

Check if the same lab product or an alternative is used in the 5 most similar protocols
RNA isolation from lung macerates of AhR ligand-treated and untreated mice was performed as previously described (37 (link)). A NanoDrop ND-1000 spectrophotometer was used to determine RNA purity and concentration. The cDNA was synthesized using 1 µg of RNA and the high-capacity RNA-to-cDNA kit (Applied Biosystems) according to the manufacturer’s instructions. The cDNA was amplified using TaqMan Universal PCR Master Mix (Applied Biosystems) and pre-developed TaqMan assay primers and probes (Ifng, Mm001168134_m1, Tnf, Mm99999068_m1, Il6, Mm00446190_m1, Il10, Mm00439614_m1, Tgfb1, Mm00117882_m1, Il17, Mm00439618_m1, Il22, Mm01226722_m1, Tbet, Mm00450960_m1; Gata3, Mm00484683_m1; Rorc, Mm01261022_m1; Foxp3, Mm00475162_m1; Gapdh, Mm99999915_g1a, all from Applied Biosystems.). PCR assays were performed on an MxP3000P QPCR System and data were developed using the MxPro qPCR software (Stratagene). The average threshold cycle (CT) values of samples were normalized to the CT value of the Gapdh gene. The relative expression was determined by the 2-ΔΔCT method.
+ Open protocol
+ Expand
3

Quantitative RT-PCR Analysis of Immune Genes

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted from cells with the NucleoSpin RNA II Isolation Kit (Macherey-Nagel, Duren, Germany), according to the manufacturer's instructions. cDNA was synthesized with an equal amount of RNA (0.25 mg from recovered cells and 1.0 mg from in vitro-differentiated cells) by using the QuantiTect Reverse Transcription Kit (Qiagen, Valencia, Calif). Predesigned primers and probes for mouse Il10 (Mm00439614_m1), Il17 (Mm00439618_m1), Foxp3 (Mm00475162_m1), Rorgt (Mm00126 1022_m1), Tak1 (Mm00554514_m1), and Gapdh (Mm99999915_g1) were obtained from Applied Biosystems (Grand Island, NY). PCR was performed with the ABI Prism 7500 Sequence Detection System. Analyses of relative gene expression were carried out with the mathematic calculation model based on DD cycle threshold values. 5
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!