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6 protocols using bs 2006r

1

Immunohistochemical Analysis of Tumor Markers

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The paraffin-embedded sections of the neoplastic tissue were dewaxed, rehydrated, and antigen-repaired with sodium citrate for 30 min. Then, they were incubated with 3% hydrogen peroxide at room temperature for 20 min. Next, the sections were blocked with 3% BSA for 1 h and labeled with a primary antibody at 4 °C overnight. The following primary antibodies were used: CDK4 (11026-1-AP, Proteintech, Wuhan, China), CydlinD1 (26939-1-AP, Proteintech, Wuhan, China), CDC25A (55031-1-AP, Proteintech, Wuhan, China), Bax (bs-0127R, Bioss, Beijing, China), Caspase-3 (50599-2-Ig, Proteintech, Wuhan, China), PCNA (bs-2006R, Bioss, Beijing, China), Ki67 (bs-23103R, Bioss, Beijing, China), B-Myb (ab12296, Abcam, Cambridge, United Kingdom), γ-H2A.X (bs-3185R. Bioss, Beijing, China), and p53 (bs-2090R, Bioss, Beijing, China). The sections were stained with iNOS, GBP5, and CD11b to analyze the phenotype of macrophages. The samples were subsequently stained with a secondary antibody (PV-9000, ZSGB-BIO, Beijing, China) at 37 °C for 1 h. Diaminobenzidine (DAB, ZL-9018, ZSGB-BIO, Beijing, China) was used for staining at room temperature for 1–3 min. The nuclei were stained with hematoxylin or DAPI. Finally, the paraffin-embedded sections were observed with an orthogonal Olympus microscope or a confocal microscope.
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2

Western Blot Analysis of Cellular Signaling

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Cells treated as described earlier were washed three times with PBS and lysed in RIPA buffer with a 1% protease inhibitor. Cell lysates were centrifuged, and the protein concentration was measured using a BCA assay kit. Equal protein aliquots (10 μg) were fractionated by SDS-PAGE and transferred to a PVDF membrane. The membranes were blocked with 3% bovine serum albumin in TBST and incubated with primary antibodies of Bax (bs-0127R, Bioss, Beijing, China), p53 (bs-2090R, Bioss, Beijing, China), γ-H2A.X (bs-3185R, Bioss, Beijing, China), PCNA (bs-2006R, Bioss, Beijing, China), LC-3 (12741S, CST, Boston, United States), Atg-5 (10181-2-AP, Proteintech, Wuhan, China), Beclin-1 (bs-1353R, Bioss, Beijing, China), NF-κB (10745-1-AP, Proteintech, Wuhan, China), p-NF-κB (bs-0982R, Bioss, Beijing, China), STING (19851-1-AP, Proteintech, Wuhan, China), cGAS (ab252416, Abcam, Cambridge, United Kingdom), iNOS (ab15323, Abcam, Cambridge, United Kingdom), GBP5 (13220-1-AP, Proteintech, Wuhan, China), Caspase-3 (50599-2-Ig, Proteintech, Wuhan, China), and GAPDH (PMK053C, BioPM, Wuhan, China) overnight at 4°C, and then, the membranes were incubated with the horseradish peroxidase-conjugated secondary antibody. Finally, protein bands were developed using an ECL, and the films were exposed using a bio-imaging system (170-8265, Bio-Rad).
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3

Protein Expression Analysis in Cells

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By adding 1 mL of RIPA buffer and 10 µL of benzylmethylsulfonyl fluoride (Solarbio, Beijing, China), total protein was extracted. The quantification of all proteins was performed using an enhanced BCA protein assay kit (Thermo Fisher Scientific, Niederelbert, Germany). Following denaturation, proteins were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). Subsequently, the proteins were transferred to a polyvinylidene fluoride membrane and blocked with 5% skim milk at 24 °C for 2 h. The membrane was then incubated with polyclonal antibodies against SPC (1:1000; AP53886PU-N; OriGene, Maryland, USA), HIF-1α (1:1000; AF1009; Affinity, Changzhou, China), EGFR (1:300; bs-10007R; Bioss, Beijing, China), EGF (1:300; bs2010R; Bioss Beijing China), PCNA (1:300; bs-2006R; Bioss Beijing China), Bax (1:300; bs-20386R; Bioss Beijing China), and β-actin (1:2000, Bioss, Beijing, China). After washing with PBS at 24 °C for 90 min, the membrane was further incubated with IgG antibody (1:3000, bs-0295G-HRP, Bioss, Beijing, China). Finally, an ECL luminescent solution was used for color development and the results were observed. β-actin served as the loading control. Grayscale values of protein bands were analyzed using ImageJ software to determine relative expression levels.
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4

Western Blot Analysis of Cell Signaling Proteins

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Lewis cells treated as mentioned before in 6-well plates were lysed in RIPA buffer with protease inhibitor. Cell lysates were cleared by centrifugation and protein concentration determined using a BCA assay kit. Equal protein aliquots (10 μg) were separated by SDS-PAGE electrophoresis and transferred to a PVDF membranes. The membranes were blocked with 5% bovine serum albumin in TBST and then incubated with antibodies of PCNA (bs-2006R, Bioss, Beijing, China), Caspase-3 (19677-1-AP, Proteintech, Wuhan, China), Bax (50599-2-Ig, Proteintech, Wuhan, China), Bcl-2 (26593-1-AP, Proteintech, Wuhan, China), CDK4 (11026-1-AP, Proteintech, Wuhan, China), p53 (bs-2090R, Bioss, Beijing, China), γ-H2A.X (bs-3185R, Bioss, Beijing, China), GPX4 (14432-1-AP, Proteintech, Wuhan, China), COX-2 (A1253, Abclonal, Wuhan, China), and GADPH (PMK053C, BioPM, Wuhan, China) overnight at 4 °C. Horseradish peroxidase-conjugated secondary antibodies were used to bind to primary antibodies as mentioned above. Protein bands were imaged using a ECL luminescent liquid (PMK003, BioPM, Wuhan, China). The bands were exposed using a Bio Imaging system (170-8265, Bio-Rad).
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5

Comprehensive Tissue Analysis Protocol

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Briefly, paraffin sections were dewaxed, rehydrated, antigen repaired with sodium citrate for 20 min. For HE staining, the paraffin sections were stained by Eosin and hematoxylin. According to the manufacturer’s instruction, tunel and PI were used to label the apoptotic cells and necrotic cells firstly, then DAPI was applied to stain the nuclei. For IHC staining, the paraffin sections were then incubated in 3% hydrogen peroxide for 12 min at room temperature. The paraffin sections were blocked with 5% BSA for 40 min, stained with primary antibodies overnight at 4 ℃, then stained with secondary antibody (PV-9000, ZSGB-BIO, Beijing, China) for 1 h at 37 ℃. Diaminobenzidine (DAB, ZLI-9018, ZSGB-BIO, Beijing, China) was applied for coloration for 1–3 min at room temperature. Hematoxylin was used to stain the nucleus. Primary antibodies included PCNA (bs-2006R, Bioss, Beijing, China), Caspase-3 (19677-1-AP, Proteintech, Wuhan, China), Bax (50599-2-Ig, Proteintech, Wuhan, China), p53 (bs-2090R, Bioss, Beijing, China), γ-H2A.X (bs-3185R, Bioss, Beijing, China), GPX4 (14432-1-AP, Proteintech, Wuhan, China), COX-2 (A1253, Abclonal, Wuhan, China). For nanagent fluorescent microscopy, cryosections were dewaxed, rehydrated, then stained by DAPI for labeling of the nucleus.
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6

Protein Isolation and Western Blot Analysis

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Total protein was isolated through use of RIPA buffer (Sigma-Aldrich) and examined through use of the BCA Protein Quantification Kit (Vazyme, China). Next, 20 μg of proteins was segregated via sodium dodecyl sulfonate-polyacrylamide gel (SDS-PAGE, Solarbio, Beijing, China) and blotted onto polyvinylidene difluoride membranes (Millipore, Billerica, MA, USA). The membranes were then blocked in 5% nonfat milk for 2 hours and washed with Tris-buffered saline Tween 20 (TBST) three times. After that, primary antibodies against proliferating cell nuclear antigen (PCNA, bs-2006R, Bioss, Beijing, China), cyclin D1 (bs-0623R, Bioss), B-cell lymphoma-2 (Bcl-2, bs-4563R, Bioss), ATP1B1 (bs-23415R, Bioss), or GAPDH (bs-2188R; Bioss) were co-incubated with the membranes at 4°C overnight followed by secondary antibody (bs-0295R-HRP, Bioss) co-incubation for 1.5 hours at indoor temperature. The protein bands were visualized via ECL reagent (Vazyme).
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