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7500 fast rt qpcr system

Manufactured by Thermo Fisher Scientific

The 7500 Fast RT qPCR System is a real-time PCR instrument designed for fast, accurate, and sensitive gene expression analysis. It features a 96-well format and supports a wide range of sample volumes and reagents. The system provides fast thermal cycling capabilities and advanced data analysis software.

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3 protocols using 7500 fast rt qpcr system

1

Gene Expression Analysis of Cellular Markers

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Total RNA was isolated by phenol extraction, using Tri Reagent (Sigma T9424) with standard laboratory techniques. mRNA was transcribed into cDNA using reverse transcriptase from Moloney Murine Leukaemia Virus (Invitrogen M-MLV-Kit, 28025-021). qRT-PCR was performed on an Applied Biosystems 7500 Fast RT qPCR System. The following pre-made assays by Applied Biosystems were used: NADPH-oxidase 4 (NOX4, Hs01558199_m1), Transgelin 1 (TAGLN, Hs00162558_m1), collagen alpha1-(V) (COL5A1, Hs00609088_m1), tropomyosin 1 (TPM1, Hs00165966_m1), smooth muscle alpha-actin (ACTA2, Hs00909449_m1), and transforming growth factor-β1 (TGFB1, Hs00171257_m1). Ribosomal 18S gene expression was used as internal standard (Applied Biosystems, 4310893E). All results were expressed as linearized values, fold over untreated control.
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2

Transcriptomic Analysis of Rice Genes Involved in Stress Response

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Thirty-eight genes responsible for JA synthesis (Module 1, 16 genes), JA signaling pathway (Module 2, 8 genes), MYB-bHLH-WDR complex (Module 3, 11 genes), and anthocyanidin synthesis (Module 4, 3 genes), respectively, were identified from three rice databases (RGAP, CRTC, and RAP-DB) and assayed for RT-qPCR tests after Cr(VI) exposure. All gene primer sequences are listed in Supplementary Table S1.
RT-qPCR cycling conditions were set up as follows: (1) denaturation at 95°C for 10 s; (2) annealing at 58°C for 30 s; and (3) extension at 72°C for 32 s. This cycle was repeated 40 times. The RT-qPCR analysis was performed by the 7,500 Fast RT-qPCR system (Applied Biosystems) and SYBR green chemistry. The house-keeping gene was OsGAPDH (glyceraldehyde-3-phosphate dehydrogenase, LOC_Os08g03290.1; Yang et al., 2021 (link)). The relative expression of each targeted gene was calculated by the standard 2−ΔΔCT method (Schmittgen and Livak, 2008 (link)).
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3

Gene Expression Quantification in MG63 and U2OS Cells

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Total RNA was extracted from MG63 and U2OS cells using TRIzol® reagent (Roche Applied Science). cDNA was synthesized using the Takara reverse transcriptase kit (Takara Bio Inc.) according to the manufacturer's instructions. The reverse transcription steps were as follows: 3 cycles of 30°C for 10 min followed by 3 cycles of 50°C for 60 min followed by 95°C for 5 min and 4°C holding. The cDNA strand was amplified by RT-qPCR using SYBR-Green I (Toyobo Life Science) on a 7500 fast RT-qPCR system (Applied Biosystems; Thermo Fisher Scientific, Inc.). The thermocycling conditions were as follows: 60 sec at 95°C followed by 40 cycles of 15 sec at 95°C, 15 sec at 60°C and 45 sec at 72°C. GAPDH and U6 were used as internal references for mRNA or miRNA, respectively. The primer sequences were as follows. CCAT2, forward 5′-CCCTGGTCAAATTGCTTAAC-3′ and reverse, 5′-TTATTCGTCCCTCTGTTTTATGG-3′; GAPDH, forward 5′-CCACATCGCTCAGACACC-3′ and reverse, 5′-ACCAGGCGCCCAATA-3′; miR-143, forward 5′-AGCGTGTGTCGTGGAGTC-3′ and reverse, 5′-TCGTGAGATGAAGCACTGTAG-3′; U6, forward 5′-CTCGCTTCGGCAGCACA-3′ and reverse, 5′-AACGCTTCACGAATTTGCGT-3′; and FOS-Like antigen 2 (FOSL2), forward 5′-GAGAGGAACAAGCTGGCTGC-3′ and reverse, 5′-GCTTCTCCTTCTCCTTCTGC-3′. The results were analyzed by the 2−ΔΔCq method (17 (link)).
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