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Vivaspin centrifugal concentrator columns

Manufactured by Sartorius

The VivaSpin centrifugal concentrator columns are a lab equipment product designed for the concentration and purification of biological samples. The columns utilize a centrifugal force to separate and concentrate the desired components from the sample.

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3 protocols using vivaspin centrifugal concentrator columns

1

Purification of His-tagged Recombinant Proteins

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V5/6xHis-tagged proteins were purified from E. coli supernatants following sonication of LB-grown planktonic cells, and centrifugation at 21,200 × g. The supernatant was loaded onto nickel-nitrilotriacetic acid (Ni-NTA) affinity resin (Qiagen), washed with buffer, and eluted with an imidazole gradient according to the manufacturer’s instructions for native protein purification. Since NicD was found to be membrane-associated, the purification was carried out with the detergent tween-20 (0.1 % final concentration) present in all buffers. Protein preparations were examined for purity by SDS-PAGE, and fractions containing pure protein were pooled and desalted using VivaSpin centrifugal concentrator columns (10 kDa cut-off, Sartorius) (Fig. S2). For di-guanylate cyclase assays, protein fractions obtained following Ni-NTA affinity chromatography from E. coli BL21 were used as negative controls.
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2

Analysis of MMP Expression and Activity

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MMP expression was analyzed by immunoblot in conditioned medium of LX‐2 cells, generated by cultivating the cells in serum‐deprived medium for 48 h, followed by protein concentration using vivaspin centrifugal concentrator columns (MWCO 3,0 kD, Sartorius GmbH). Protein contents were analyzed according to Bradford using Rotiquant (Roth, Karlsruhe, Germany). Either 20 or 40 μg of protein was loaded on 10% polyacrylamide gels and subsequently blotted on PVDF membranes. For the detection of specific proteins, the following antibodies were used: anti‐MMP‐2 (AF902, 2 μg·mL−1; R&D Systems); anti‐MMP‐9 (MAB‐911, 4 μg·mL−1, R&D); MMP‐7 (IMG‐3873; 0.5 μg·mL−1, IMGENEX); MT1‐MMP/MMP‐14 (D1E4, 1 : 1000, Epitomics); TIMP‐2 (MAB971, 1 : 500, R&D). Protein contents were visualized on a ChemiDoc MP system using the imagelab software for quantification (both from Bio‐Rad Laboratories GmbH, Munich, Germany). For the demonstration of equal loading, the membranes were subsequently stained with Ponceau S (Sigma‐Aldrich). MMP‐2 and ‐9 activity was determined using gelatine containing zymography gels (Thermo Fisher Scientific, Karlsbad, CA, USA) as previously described [41 (link)].
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3

Purification of Recombinant BrlR Protein

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For electrophoretic mobility shift assay (EMSA), His6V5-tagged BrlR protein was purified from E. coli or P. aeruginosa. For in vitro c-di-GMP binding assays, His6V5-tagged BrlR was purified from P. aeruginosa. Briefly, supernatants following sonication of planktonic cells, and centrifugation at 21,200 × g were loaded onto nickel-nitrilotriacetic acid (Ni-NTA) affinity resin (Qiagen), washed with buffer, and eluted with an imidazole gradient according to the manufacturer’s instructions for native protein purification. Protein preparations were examined for purity by SDS-PAGE, and fractions containing His6V5-tagged BrlR were pooled and desalted using VivaSpin centrifugal concentrator columns (10 kDa cut-off, Sartorius).
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