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6 protocols using hrp linked goat anti rabbit igg

1

Proteomic analysis of BMSCs, exosomes, and myocardial tissue

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The BMSCs, exosomes, and myocardial tissue were subjected to lysis through RIPA lysis buffer® (Millipore Corporation™, Billerica, MA, USA), with the total proteomic concentration in cell exosomes or tissue asserted using a BCA protein assay kit® (Beyotime™, Shanghai, China), following the protocol provided by the manufacturer. Equivalent proteomic content was resolved in 10% SDS-PAGE gels and transferred into PVDF membranes (Merck Millipore™, MA, USA) which were blocked using 5% nonfat milk for 60 min/RT.
The membranes were incubated using primary antibodies against Nrf2 (1 : 1000, Invitrogen), HO-1 (1 : 1000, Abcam, Cambridge, UK), CD9 (1 : 500, Invitrogen), CD63 (1 : 500, Invitrogen), CD81 (1 : 2000, Abcam), TSG101 (1 : 500, Santa Cruz, CA, USA), Alix (1 : 500, Santa Cruz), calnexin (1 : 500, Santa Cruz), or GAPDH (1 : 10000, Abcam) at 4°C overnight, followed by incubation using HRP-linked goat anti-rabbit IgG (1 : 5000, Abcam) at 37°C for 1 hour. Proteomic bands were developed and scrutinized through enhanced chemiluminescence (ECL) (Thermo Scientific™, Rockford, IL, USA), quantified using ImageJ software.
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2

Quantifying Rubisco and EPYC1 Proteins

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PCRs were performed as in McCormick and Kruger (2015) (link) using gene-specific primers (Supplementary Table S2). Soluble protein was extracted from frozen leaf material of 21-d-old plants (sixth and seventh leaf) in 5× Bolt LDS sample buffer (ThermoFisher Scientific) with 200 mM DTT at 70 °C for 15 min. Extracts were centrifuged and the supernatants subjected to SDS–PAGE on a 4–12% (w/v) polyacrylamide gel and transferred to a nitrocellulose membrane. Membranes were probed with rabbit serum raised against wheat Rubisco at 1:10 000 dilution (Howe et al., 1982 ) or against EPYC1 at 1:2000 dilution (Mackinder et al., 2016 ), followed by horseradish peroxidase (HRP)-linked goat anti-rabbit IgG (Abcam) at 1:10 000 dilution, and visualized using Pierce ECL Western Blotting Substrate (Life Technologies).
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3

Quantification and Characterization of Extracellular Vesicles

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The amounts of total protein from lEV samples were determined with a bicinchoninic acid assay kit (Pierce, Thermo Scientific, Rockford, IL, USA), according to the manufacturer’s instructions. Western blot analysis was used to determine the EV protein markers, cardiomyocyte marker and EV purity in lEV samples. All samples were adjusted to 30 μg of total protein before mixing with reducing sample buffer and loaded into 10% SDS–polyacrylamide gel electrophoresis. Then, proteins were transferred to a PVDF membrane (Amersham Hybond PVDF Membrane, GE Healthcare Life Sciences, Freiburg, Germany). Membrane was blocked with 5% w/v non-fat milk in TBST buffer and then incubated with primary antibodies; anti-CD63, anti-Alix, anti-Apolipoprotein A (Abcam, Cambridge, MA, USA) and anti-Caveolin 3 (Invitrogen, Thermo Fisher Scientific, Waltham, MA USA) overnight at 4 °C. After washing, membranes were incubated with HRP linked goat anti-rabbit IgG (Abcam Cambridge, MA, USA) for 1 h at room temperature. Chemiluminescent detection was performed using Clarity Western ECL Substrate (Biorad Laboratories, Inc, Hercules, CA, USA). Protein bands were visualized by ImageQuant LAS 4000 (GE Healthcare Life Sciences).
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4

Quantitative analysis of leaf photosynthetic proteins

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Soluble protein was extracted from frozen leaf material of 21-d-old plants (sixth and seventh leaf) in protein extraction buffer [20 mM Tris–HCl pH 7.5 with 5 mM MgCl2, 300 mM NaCl, 5 mM DTT, 1% Triton X-100, and cOmplete Mini EDTA-free Protease Inhibitor Cocktail (Roche)]. Samples were heated at 80 °C for 15 min with 1× Bolt LDS sample buffer (ThermoFisher Scientific) and 200 mM DTT. Extracts were centrifuged and the supernatants subjected to SDS-PAGE on a 12% (w/v) polyacrylamide gel and transferred to a nitrocellulose membrane. Membranes were probed with rabbit serum raised against wheat Rubisco at 1:10,000 dilution (52 (link)), the SSU RbcS2 from Chlamydomonas (CrRbcS2) [raised to the C-terminal region of the SSU (KSARDWQPANKRSV) by Eurogentec] at 1:1,000 dilution, ACTIN (AS21 4615, Agrisera) at 1:1,000 dilution, SAGA1 at 1:1,000 dilution (20 (link)), SAGA2 (raised against the peptide sequence SRNGTHAAGEDVREV by Eurogentec) at 1:1,000, and EPYC1 at 1:2,000 dilution (17 (link)), followed by HRP-linked goat anti-rabbit IgG (Abcam) or HRP-linked rabbit anti-mouse (Agrisera) at 1:10,000 dilution, and visualized using Pierce ECL Western Blotting Substrate (Life Technologies).
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5

Western Blot Analysis of PGC1α Protein

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Total cellular protein was isolated from exponentially growing cells and lysed in ice cold RIPA buffer containing 1 × cOmplete Mini Protease Inhibitor Tablets (Roche). Protein concentration were quantified and 75 ug resolved (SDS-PAGE) using 10% polyacrylamide gels, transferred to PVDF membrane and probed with primary antibody against PGC1α (PA5-72948, Invitrogen) and Beta-Actin (ab8229, abcam) overnight at 4 °C. Primary antibody was detected with HRP-linked goat anti-rabbit IgG (abcam) and signal captured (ChemiDoc XRS + system (Bio-Rad)).
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6

Immunoblotting Analysis of Rubisco

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Soluble protein was extracted from frozen leaf material of 21-day-old plants (sixth and seventh leaf) in protein extraction buffer (50 mM HEPES-KOH pH 7.5 with 17.4% glycerol, 2% Triton X-100 and cOmplete Mini ethylenediaminetetraacetic acid (EDTA)-free Protease Inhibitor Cocktail (Roche, Basel, Switzerland). Samples were heated at 70 °C for 15 min with 1× Bolt LDS sample buffer (ThermoFisher Scientific, UK) and 200 mM dithiothreitol (DTT). Extracts were centrifuged and the supernatants subjected to SDS-PAGE on a 12% (w/v) polyacrylamide gel and transferred to a nitrocellulose membrane. Membranes were probed with rabbit serum raised against wheat Rubisco at 1:10,000 dilution42 (link), the SSU RbcS2 from Chlamydomonas (CrRbcS2) (raised to the C-terminal region of the SSU (KSARDWQPANKRSV) by Eurogentec, Southampton, UK) at 1:1000 dilution, Actin (66009-1-Ig, Proteintech, UK) at 1:1000 dilution and EPYC1 at 1:2000 dilution16 (link), followed by IRDye 800CW goat anti-rabbit IgG (LI-COR Biotechnology, Cambridge, UK) at 1:10,000 dilution, and visualised using the Odyssey CLx imaging system (LI-COR Biotechnology), or by HRP-linked goat anti-rabbit IgG (Abcam) at 1:10,000 dilution, and visualised using Pierce ECL Western Blotting Substrate (Life Technologies).
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