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5 protocols using di01 r405 488 561 635 25 36

1

Super-Resolution Imaging of S. pombe

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S. pombe cells with mEos3.1-tagged proteins were imaged with a custom-built inverted microscope (Olympus IX71) fitted with a motorized stage (Prior H117E1I4), using a 561-nm imaging laser (Cobolt, Jive) and a 405-nm activation laser (LaserBoxx, Oxxius). Each laser line displayed a quarter-wave plate (Thorlabs WPQ05M-405 and -561) and a low pass filter (Semrock FF01-417/60-25 and FF01-561/14-25). Both laser beams were expanded and collimated with a custom-built beam expander constituted of two matching lenses (Thorlabs LC1975 and LA1986), and coupled using a dichroic mirror (Semrock FF552-Di02-25). The resulting beams were focused to the back focal plane of an apochromatic 1.45 NA, 60× TIRF objective (Olympus, UIS2 APON 60× OTIRF) using a coated plane convex lens (Thorlabs LA1253-A). A multi-band dichroic mirror (Semrock Di01-R405/488/561/635-25 36), a band-pass filter (Semrock FF01-580/14-25) and a longpass filter (Semrock BLP02-561R-25) were used to separate fluorescence signal from the laser emission. The emission beam was further enlarged by a 2.5 beam expander, leading to an optimized pixel size of 107 nm/pixel after projection onto the EMCCD camera (Photometrics Evolve 512).
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SPEED Microscope Multicolor Imaging

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The SPEED microscope included an Olympus IX81 equipped with a 1.4-NA 100×oil-immersion apochromatic objective (UPLSAPO 100×, Olympus), a 35 mW 633 nm He-Ne laser (Melles Griot), 50 mW solid state 488-nm and 561-nm lasers (Coherent), an on-chip multiplication gain charge-coupled-device camera (Cascade 128 + , Roper Scientific) and the Slidebook software package (Intelligent Imaging Innovations) for data acquisition and processing. For individual channel imaging, GFP (or mCitrine), mCherry, and Alexa Fluor 647 were excited by 488 nm, 561 nm, and 633 nm lasers, respectively. The fluorescence emissions were collected by the same objective, filtered by a dichroic filter (Di01- R405/488/561/635-25 × 36, Semrock) and an emission filter (NF01- 405/488/561/635-25 × 5.0, Semrock) and imaged with the above CCD camera operating at 500 Hz.
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SPEED Microscope Setup for Quantitative Imaging

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The SPEED microscope setup has been extensively described in previous publications [27] , [30] . Briefly, it consists of an Olympus IX81 with a 1.4 NA 100× oil-immersion apochromatic objective (UPLSAPO 100X, Olympus), a 35 mW 633 nm He-Ne laser (Melles Griot), a 120 mW ArKr tunable ion laser (Melles Griot), an on-chip multiplication gain charge-coupled device camera (Cascade 128+, Roper Scientific) and the Slidebook software package (Intelligent Imaging Innovations) for data acquisition and processing. Cascade 128+ (128×128 pixels) was used to monitor the fast nuclear import process.
An optical chopper (Newport) was used to generate an on-off mode of laser excitation. GFP and Alexa Fluor 647 fluorescence were excited by 488 nm and 633 nm lasers, respectively. The two lasers were combined by an optical filter (FFF555/646 Di01, Semrock), collimated and focused into an overlapped illumination volume in the focal plane. The green and red fluorescence emissions were collected by the same objective, filtered by a dichroic filter (Di01- R405/488/561/635-25×36, Semrock) and an emission filter (NF01- 405/488/561/635-25×5.0, Semrock) and imaged by an identical CCD camera. The system error of alignment between red and green fluorescence channels is 3.0±0.1 nm, determined by measuring 230 immobile Alexa Fluor 647-labeled GFP fluorescent molecules on the surface of a cover-slip.
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Multichannel Fluorescence Microscopy Setup

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Custom laser optics, configured with 635-nm and 405-nm diode lasers (OptoEngine) for the excitation and photoactivation, respectively, of Alexa Fluor 647, were used with a Zeiss Axio Observer.A1 microscope. The lasers were reflected onto the sample using a dichroic filter (Di01-R405/488/561/635-25× 36; Semrock) and focused on the back focal plane of a 63×, 1.46 NA Zeiss objective lens. The fluorescence emitted by Alexa Fluor 647 was collected by the objective lens and filtered with a single bandpass filter (FF01-676/29-25; Semrock). Images were acquired using an electron-multiplying charge-coupled device camera (iXon DU897-BV; Andor) in conventional readout mode. The pixel size of the camera was 16 μm × 16 μm. Custom software written in the C programming language was used to control and synchronize the various components, including the lasers, shutters, and the camera.
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5

SPEED Microscopy for Somatostatin Signaling

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The SPEED microscopy setup includes an Olympus IX81 equipped with a 1.4-NA 100× oil-immersion apochromatic objective (UPLSAPO 100×, Olympus), a 35-mW 633 nm He–Ne laser (Melles Griot), 50-mW solid state 488-nm and 561-nm lasers (Coherent), an on-chip multiplication gain charge coupled–device camera (Cascade 128+, Roper Scientific), and the Slidebook software package (Intelligent Imaging Innovations) for data acquisition and processing. For individual channel imaging, GFP, mCherry, and Alexa Fluor 647 were excited by 488-nm, 561-nm, and 633-nm lasers, respectively. The fluorescence emissions were collected by the same objective, filtered by a dichroic filter (Di01- R405/488/561/635-25 ×36, Semrock) and an emission filter (NF01- 405/488/561/635-25 ×5.0, Semrock) and imaged with the above CCD camera operating at either 500 Hz when the two- to three-dimensional transformation was performed or 100 Hz when SSTR3/RAB8A cotracking and SSTR3-GFP directionality tracking under somatostatin stimulation.
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