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32 protocols using ag 20b 0042 c100

1

Western Blot Analysis of Caspase-1 and GBP Proteins

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For signaling blots, supernatant was removed, and cells were lysed in RIPA buffer containing protease and phosphatase inhibitors plus 4x Laemmli sample buffer. Caspase-1 cleavage was measured from the combined cell lysate and supernatants. Proteins were separated via SDS-PAGE with 6–12% polyacrylamide gels, transferred to PVDF membranes (IPVH00010, Millipore), and blocked with 5% nonfat dry milk. Primary antibodies against caspase-1 (AG-20B-0042-C100, Adipogen), GBP2 (11854-1-AP, Proteintech), GBP5 (13220-1-AP, Proteintech), or β-actin (8457, Cell Signaling Technologies) were incubated overnight at 4°C followed by appropriate secondary antibodies conjugated with HRP incubated for 1 h at room temperature (Jackson ImmunoResearch, West Grove, PA). Membranes were visualized using Luminata Forte Chemiluminescence substrate (WBLUF0500, Millipore) on a BioRad ChemiDoc.
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2

Western Blotting for Inflammasome Proteins

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Unless otherwise stated, cell lysates and culture supernatants were combined for Western blotting. Protein samples were denatured in Laemmli buffer, boiled at 95°C for 10 min, separated by SDS-PAGE, and transferred to polyvinylidene difluoride membranes. PBS supplemented with 0.05% Tween-20 (vol/vol) and 3% nonfat dry milk (wt/vol) was used for blocking and washing of membranes. Immunoblots were incubated overnight with primary antibodies against caspase-1 (AG-20B-0042-C100; 1:1,000; Adipogen), GSDMD (1:1,000; Genentech; Aglietti et al., 2016 (link)), or IL-1β (GTX74034; 1:3,000; Genetex), followed by HRP-conjugated secondary antibodies raised against mouse, goat, or rabbit (1:5,000). The β-actin–HRP antibody was used at 1:5,000 in PBS 0.1% Tween-20 and 5% nonfat dry milk. All proteins were detected by enhanced chemiluminescence.
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3

Inflammasome Activation Pathway Protocol

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ODZ was provided by Professor Sang-Kyu Ye (Department of Pharmacology, Seoul National University College of Medicine, Seoul, Republic of Korea) [21 (link)]. Penicillin-streptomycin, trypsin-EDTA, Fetal bovine serum, RPMI 1640, DMEM-high glucose pyruvate, and Opti-MEM were purchased from Gibco (Grand Island, NY, USA). LPS (O111:B4), ATP and DMSO were purchased from Sigma-Aldrich (St. Louis, MO, USA). Nigericin, nano-SiO2, imiquimod, poly(dA:dT), MSU crystal, Y-VAD-CMK, MCC950, lipofectamine-2000, and mouse IL-1β ELISA kit were purchased from InvitroGen (San Diego, CA, USA). Flagellin was purchased from Adipogen (San Diego, CA, USA). Mouse IL-1β antibody (AF-401-NA) and human IL-1β ELISA kit were purchased from R&D Systems (Minneapolis, MN, USA). Antibodies against mouse caspase-1 (AG-20B-0042-C100), ASC (AG-25B-0006-C100), and NLRP3 (AG-20b-0014-C100) were purchased from Adipogen (San Diego, CA, USA), and mGSDMD (ab209845) was purchased from Abcam (Cambridge, UK). Anti-FLAG antibody (F1804) and β-Actin antibody (SC-4778) were purchased from Sigma-Aldrich (St. Louis, MO, USA) and Santa Cruz biotechnology (Dallas, TX, USA), respectively.
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4

Immunoblotting of Inflammasome Proteins

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Cell lysates and culture supernatants were incubated with cell lysis buffer (20 mM Tris–HCl [pH 7.4], 200 mM NaCl, 1% Nonidet P-40) and were denatured in lithium dodecyl sulfate sample buffer (M00676; GenScript) and boiled at 95°C for 10 min. SDS-PAGE–separated proteins were transferred to PVDF membranes and immunoblotted with primary antibodies against caspase-1 (AG-20B-0042-C100; Adipogen), IL-1β (GTX74034; Genetex), GSDMD (ab219800; Abcam), and β-actin (SC-47778HRP; Santa Cruz Biotechnology). Peroxidase-AffiniPure Goat Anti-Mouse (115-035-146; Jackson Immunoresearch Laboratories) or Anti-Rabbit (111-035-144; Jackson Immunoresearch Laboratories) secondary antibodies were used to detect proteins by enhanced chemiluminescence (34580; Thermo Fisher Scientific).
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5

Western Blot Analysis of Caspase-1 Expression

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Cell lysates and culture supernatants were incubated with 1X Caspase Lysis Buffer (0.1% NP-40, 20 mM NaCl, 2 mM Tris-HCl, pH 7.4) on ice and denatured in Laemmli buffer. Samples were boiled and separated by SDS-PAGE. Separated proteins were transferred to PVDF membranes. Blocking, incubation with antibody, and washing of the membrane were done in PBS supplemented with 0.05% Tween-20 (vol/vol) and 3% (wt/vol) nonfat dry milk. Immunoblots were incubated overnight with primary antibodies against caspase-1 (AG-20B-0042-C100; 1:1,000; Adipogen), followed by HRP-conjugated secondary anti–mouse antibodies (1:5,000; 115–035-146; Jackson ImmunoResearch Laboratories) to detect proteins by enhanced chemiluminescence (Thermo Fisher Scientific).
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6

Immunoblotting of Inflammasome Proteins

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Cells and culture supernatants were incubated in cell lysis buffer (20 mM Tris HCl (pH 7.4), 200 mM NaCl, 1% Nonidet P-40) for 10 min on ice followed by denaturation by boiling in Laemmli buffer for 10 min. Protein samples were resolved by SDS-PAGE electrophoresis and then transferred to polyvinylidene fluoride (PVDF) membranes by semi-dry blotting. The PVDF membrane blocking, antibody incubation, and washing steps were performed using PBS containing 0.05% Tween 20 (v/v) together with 3% (w/v) non-fat dry milk. The incubation of the membranes with primary antibody was performed overnight at 4°C and the primary antibodies used in this study included: caspase-1 (AG-20B-0042-C100, 1:1,000, Adipogen), IL-1β (GTX74034, 1:3,000, GeneTex) and γ-Tubulin (T6557-100UL, 1:1,000, Sigma Aldrich). HRP-conjugated secondary anti-mouse and anti-rabbit antibodies (111-035-144 and 115-035-146; 1:5,000, Jackson ImmunoResearch Laboratories), followed by ECL (Thermo Scientific) incubation were used for signal detection and visualization.
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7

Signaling Blot Protein Detection

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For signaling blots, the supernatant was removed, and cells were lysed in radioimmunoprecipitation assay (RIPA) buffer containing protease and phosphatase inhibitors plus 4× Laemmli sample buffer. Caspase and GSDMD cleavage were measured from the combined cell lysate and supernatants. Proteins were separated via SDS-PAGE with 8 to 12% polyacrylamide gels, transferred to polyvinylidene difluoride (PVDF) membranes (IPVH00010, Millipore), and blocked with 5% nonfat dry milk. Primary antibodies against caspase-1 (AG-20B-0042-C100, Adipogen), caspase-3/cleaved-caspase-3 (9662 and 9661, CST), caspase-7/cleaved-caspase-7 (9492 and 9491, CST), caspase-8/cleaved-caspase-8 (4927, CST and AG-20T-0138-C100, Adipogen), caspase-9 (9504, CST), GSDMD (ab209845, Abcam), p-RIPK3 (91702, CST), RIPK3 (2283, ProSci), p-MLKL/MLKL (37333 and 37705, CST), and β-actin (4970, CST) were incubated overnight at 4°C followed by appropriate secondary antibodies conjugated with horseradish peroxidase (HRP) incubated for 1 h at room temperature (Jackson ImmunoResearch, West Grove, PA). Membranes were visualized using Luminata Forte Chemiluminescence substrate (WBLUF0500, Millipore) or SuperSignal West Femto substrate (34096, Thermo Fisher Scientific) on a Bio-Rad ChemiDoc.
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8

Immunoblot Analysis of Inflammasome Proteins

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Lysis buffer containing 10 mM Tris-buffer (pH 7.6), 1% Triton X-100, 1% phosphatase inhibitor cocktail, and 1 mM PMSF was used to lyse cells. Cell lysates were then boiled in SDS sample buffer and resolved on a 10% SDS-PAGE gel. Immunoblots were incubated overnight with primary antibodies against NLRP3 (AG-20B-0014-C100, Adipogen, CH), ASC (AG-25B-0006, Adipogen, CH), mouse caspase-1 (AG-20B-0042-C100, Adipogen, CH), human caspase-1 (AG-20B-0048-C100, Adipogen, CH), IkBa (4814, Cell Signaling, USA), phospho-IkBa (2859, Ser32) (Cell Signaling, USA), A20 (23456-1-AP, Proteintech, USA), IL-1β (12242, Cell Signaling, USA) human GSDMD (sc-81868, Santa Cruz Biotechnology, USA), mouse GSDMD (ab209845, Abcam, USA), and GAPDH (10494-1-AP, Proteintech, USA). Immunoblots were examined using an ECL detection reagent (Millipore Corporation, Billerica, MA, USA).
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9

Imaging Primary Microglial Mitochondria

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Primary microglial cells were plated on PDL‐coated coverslips. Cells grown on coverslips were washed with PBS and fixed in 4% PFA for 20 min at RT. The fixed cells were then washed with PBS and permeabilized in PBS containing 0.1% Triton X‐100 and 10% normal horse serum for 1 h. Cells were incubated with primary antibodies overnight at 4°C. After washing with PBS, the cells were incubated with Alexa Fluor 488‐ or 594‐conjugated anti‐rabbit or anti‐mouse IgG secondary antibodies for 1 h. Cell nuclei were stained with DAPI. The coverslips were imaged on a confocal laser microscope (ZEISS, Jena, Germany) with a 40× and 63× water‐immersion objective lens. The images were processed using the ZEN software. The primary antibodies used were anti‐caspase‐1 mouse antibody (1:250, AG‐20B‐0042‐C100, Adipogen), anti‐ASC rabbit antibody (1:500, NBP1‐78977, Novus), and anti‐TOM20 rabbit antibody (1:100, sc‐11415, Santa Cruz). Mitochondrial length was measured by tracing the fluorescence signals of TOM20 using the ZEN software developed by Carl Zeiss Microscopy. The average value of mitochondrial length in each group was measured and analyzed. For each group, approximately 300 mitochondria from three independent experiments were measured.
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10

NLRP3 Inflammasome Activation Assay

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GPS (purity > 97%, #20831-76-9) was purchased from Yuanye Bio-Technology (Shanghai, China). GPS was dissolved in PBS as a stock solution at 1 g/ml and stored at 4 °C before use. Lipopolysaccharide (LPS) (L2630) was purchased from Sigma–Aldrich (USA). Antibodies against NLRP3 (AG-20B-0014-C100) and Caspase-1 (AG-20B-0042-C100) were purchased from Adipogen Life Sciences (San Diego, USA). Antibodies against ASC (#67824) and β-actin (#3700) were obtained from Cell Signaling Technology (Cell Signaling, Danvers, Technology, MA, USA). Horseradish peroxidase (HRP)-conjugated goat anti-mouse (SA00001-1), and HRP-conjugated goat anti-rabbit (SA00001-2) antibodies were purchased from proteintech (Boston, MA, USA). The BCA Protein Assay Kit was obtained from Beyotime (Beyotime Institute of Biotechnology, Nanjing, China).
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