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28 protocols using foxp3 staining kit

1

Murine Splenocyte Cytokine Profiling

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2x106 splenocytes from each sample were plated in a 96-well plate. After centrifugation, cells were resuspended and incubated in culture medium (R10) consisting of RPMI 1640 containing 10% FBS (Mediatech, Herndon, VA), 2mM L-glutamine, 0.01 M HEPES buffer, 100mg/ml gentamicin (Mediatech), and 5×10-5M 2-mercaptoethanol (Sigma-Aldrich, St. Louis, MO). To test intracellular cytokine, cells were stimulated with 30 mg/ml PMA and 400 ng/ml ionomycin in the presence of GolgiStop (BD Pharmingen) for 4 hours at 37°C.
After incubation and stimulation, cells were surface-stained with anti-CD3-PB (BD), anti-CD4-PerCP (BD), anti-CD8-PO (Biolegend), anti-BTLA-PE, anti-2B4-APC, anti-PD-1-APC-Cy7 (all from eBioscience). Then cells were permeabilized using fixation and permeabilization solution (BD). We used anti-IL-2-FITC (BD), anti-TNF-PE-Cy7 (Biolegend) and anti-IFN-γ-Alexa 700 (BD) for intracellular cytokine staining. In some experiments, cells were stained intracellularly for Ki-67 using the Foxp3 staining kit (BD Pharmingen). Samples were analyzed on an LSRII flow cytometer (BD) and data were analyzed using FlowJo software (FlowJo, LLC) and SPADE (Cytobank.org) (see below).
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2

Flow Cytometric Quantification of CD4+ Foxp3+ Regulatory T Cells

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The IELs were stained with fluorochrome-labeled antimouse CD4 (RM4-5, BD Biosciences, USA). Intracellular detection of Foxp3 was performed using the Foxp3 Staining Kit from BD Bioscience with anti-Foxp3 (MF-23, BD Biosciences, USA), according to the manufacturer’s recommendations. The cells were quantified via flow cytometry on a FACSCanto (BD Biosciences, USA) and were blindly analyzed using the FlowJo software V.9 (FlowJo, LLC, USA).
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3

Multiparametric Flow Cytometry Analysis

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Cells were stained with relevant antibodies for 30 min on ice for cell surface staining. For 2W:IAb tetramer staining, cells were stained for 1 hr at room temperature. For intracellular staining of cytokines, cells were stimulated in the presence of Golgiplug (BD Biosciences) for 5 hr, stained for cell surface molecules, fixed, permeabilized, and stained for intracellular cytokines using the BD Biosciences intracellular cytokine staining kit. For detecting Foxp3 expression, cells were stained using the BD Biosciences Foxp3 staining kit. For pSTAT3 staining, cells were stimulated with IL-6 in vitro for 20 min, fixed and permeabilized with 90% methanol, then stained with anti-pSTAT3 (Y705) antibody. Cells were analyzed on a FACSCalibur flow cytometer or LSRII (BD Biosciences) with FlowJo software (Tree Star, Ashland, OR).
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4

Murine FOXP3+ T-cell Phenotyping

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Single-cell suspensions were stained as described: intracellular CTLA-4 and intranuclear transcription factor staining for murine FOXP3 was carried out using the FOXP3 staining kit (BD Biosciences) following the manufacturer's recommendations. Dead cells were excluded from all analyses using fixable LIVE/DEAD cell stain (Thermo Fisher Scientific). Data were acquired on a BD LSRII and analyzed using FlowJo software v10.7.1. Antibodies used for phenotyping are listed in Table S2. Experiment was repeated three times with different donor cells for CAR transductions for each repeat.
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5

Multiparametric Analysis of Immune Cells

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Mouse thymus, spleen, and lymph node (LN) were processed into single cell suspensions, and analyzed by flow cytometry. Thymic epithelial cells (TECs) were isolated as previously described (34 (link)). Dead cells were stained by a fixable viability dye conjugated to eFluor780 (eBioscience). Fixation and intracellular/intranuclear staining were performed using the eBioscience Foxp3 staining kit or BD Fixation/Permeabilization Solution Kit. The following antibodies were purchased from BD biosciences: TCRβ (H57–597), TCRγδ (GL-3) and EpCAM (G8.8). The following antibodies were purchased from eBioscience: CD3 (145–2C11), CD4 (GK1.5), CD11c (N418), CD25 (PC61.5), CD45R (B220, RA3–6B2), MHCII (M5/114) and Ki67 (SolA15). The following antibodies were purchased from BioLegend: CD8 (53–6.7), CD11b (M1/70), CD44 (IM7), CD45 (30-F11), CD62L (MEL-14), CD122 (TM-β1), Gr-1 (RB6–8C5), Ly-51 (6C3), NK-1.1 (PK136) and TER-119 (TER-119). UEA-1 was purchased from Vector Laboratories. Data were collected using a BD LSR II flow cytometer and were analyzed using FlowJo V10 (Treestar Inc.). The TaqMan Gene Expression Assay (ID: Mm00502000_m1, Thermo Fisher Scientific) for quantification of Klotho gene expression.
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6

Isolation and Stimulation of Tregs and Th17 Cells

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Naïve CD4+ T cells were isolated from the spleens according to the manufacturer’s instruction (Stem Cell) and stimulated with addition of IL-2 (30U/ml) and TGFβ (15ng/ml) for Tregs or TGFβ (15ng/ml), IL-6 (10ng/ml), anti-mouse IFNγ Ab (5µg/ml) and anti-mouse IL-4 Ab (5µg/ml) for Th17 for 4-5 days. Foxp3 was stained using FoxP3 Staining Kit (BD560131) according to the instruction.
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7

Evaluating Circulating T Cells in Mice

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In blood samples from different mice groups, circulating levels of T lymphocytes were evaluated. Cell surface staining was performed using FITC-labeled anti-CD3 or anti-CD8 and PE-labeled anti-CD4 (BD Pharmingen). After cell surface staining, Foxp3 was stained using Foxp3 staining kit (BD Pharmingen) according to manufacture instruction. Flow cytometry analysis was conducted on a FACSCalibur (BD Biosciences) with Cell Quest Pro software.
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8

PBMC Immunophenotyping by Flow Cytometry

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1×106 PBMCs from pre stimulation, CMVpp65 stimulated and CD25 positive fractions were stained with CD3-APC, CD25-PE, CD4-APC Cy7 and CD8-PerCP then fixed and permeabilized using the FoxP3 staining kit (BD Bioscience) before staining with either FoxP3-Alexa Fluor 488 monoclonal antibody or matched IgG isotype control. Samples were acquired on the FACScan flow cytometer with a minimum of 50,000 CD4+ events recorded.
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9

Immunophenotyping of T-cell Subsets

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Th1, Th2 and Th17 frequencies were determined using intracellular staining followed by flow cytometry [24 (link)]. Whole blood (500 μl) was diluted 1:1 with RPMI medium supplemented with 10% fetal bovine serum and 1% antibiotic, and cultured with 50 ng PMA (Sigma, St Louis, MO, USA), 1 μg/ml ionomycin (Sigma, USA) and 10 μg/ml brefeldin-A (Sigma, USA) at 37°C in 5% CO2 for 6 h. Then, the cells were first surface-stained with anti-CD4-FITC and anti-CD3-APC antibodies, followed by fixation and permeabilization using cytofix/cytoperm kit (BD Biosciences, Franklin Lakes, NJ, USA). The permeabilized cells were then treated with anti-IFNγ-PE, anti-IL-17A-PerCP-Cy5.5 or anti-IL-4-PE intracellular antibodies. The Th1, Th2 and Th17 cells were then counted as CD4+/IFNγ+ cells CD4+/IL-4+ cells and CD4+/IL-17A+ cells, respectively, in the CD3 gate.
For Treg enumeration, Foxp3 staining kit (BD Pharmingen, USA) was used. In brief, dual surface staining for anti-CD4-FITC and anti-CD25-APC, and intracellular staining for anti-Foxp3-PE was done as per the manufacturer’s instruction. The data were acquired using a BD Canto II (BD Biosciences) flow cytometer and FACS Diva software. CD25+/Foxp3+ cells in CD4+ gate were considered as Tregs [24 (link)]. An unstained tube was used as negative control for each specimen.
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10

Multiparameter Flow Cytometry Assay

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5 × 106 cells were resuspended in 100 μl staining buffer (1% BSA, 0.1% sodium azide in PBS). Cells were blocked with Fcγ receptor for 15 min and stained for surface antigens with flow cytometry Abs for 30 min at 4 °C. A fixable LIVE/DEAD stain (Invitrogen) was used to measure viability, and FSC/SSC parameters were used to exclude doublets from analysis. For intracellular staining, cells were treated using the Foxp3 Staining Kit (BD) according to the manufacture’s instructions. Cellular fluorescence was determined using a LSRII, or a FACSCalibur flow cytometer (BD Biosciences), and data analyses were performed with FlowJo software (Tree Star). The antibodies used in this study are shown in Supplementary Table 1.
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