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Deoxynucleoside triphosphate

Manufactured by Meridian Bioscience
Sourced in Germany, United States

Deoxynucleoside triphosphate is a chemical compound that serves as a building block for the synthesis of DNA. It consists of a deoxyribose sugar, a nitrogenous base, and three phosphate groups. This molecule plays a crucial role in the process of DNA replication and amplification, which are fundamental to many scientific and diagnostic applications.

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2 protocols using deoxynucleoside triphosphate

1

Bacterial DNA Amplification by PCR

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PCR was performed using primer sets shown in Supplementary Table S6. Each reaction contained 2.5 μl of 10 × PCR buffer (NEB, Germany), 1 unit of Taq DNA polymerase (NEB, Germany), 5 pmol of each forward and reverse primer, 200 μM of each deoxynucleoside triphosphate (Bioline, Germany) and distilled water to a total reaction volume of 15 μl. A small amount of a single bacterial colony resuspended in 10 µl of distilled water and heated for 10 min at 95 °C or 10 ng plasmid DNA was used as DNA template. DNA amplification was performed in a PCR thermal cycler using the following conditions: 94 °C for 5 min, followed by 30 cycles of 30 seconds at 94 °C, 1 min at 55 °C, and 1 min at 72 °C, with a final extension of 5 min at 72 °C.
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2

Quantitative Real-Time RT-PCR for Gene Expression

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Total RNA was isolated from cells or tissues using TRIzol reagent (Invitrogen; Thermo Fisher Scientific, Inc., Cergy Pontoise, France). Next, 3 mg total RNA was denatured for 10 min at 70°C and then reversed transcribed into cDNA at 37°C for 90 min using 300 U Moloney murine leukemia virus reverse transcriptase, 15 mg oligo dT primers (both Invitrogen; Thermo Fisher Scientific, Inc., Waltham, MA, USA) and 1 mM deoxynucleoside triphosphate (Bioline, London, UK) in a total volume of 30 ml. qPCR was then performed using a SYBR Green PCR Master Mix kit (ABgene; Thermo Fisher Scientific, Inc., Courtaboeuf Cedex, France) supplemented with 0.5 mM primers. The PCR mixture contained 7.5 µl SYBR Green, 4.5 µl water, 1 µl forward and reverse primers, respectively, and 2 µl DNA template. The primers were: Human TMEM35 forward, 5′-TGGGGACTATCAAGCTGACC-3′, and reverse, 5′-CAATGCTTTTTCGGAGGAGA-3′; β-actin forward, 5′-AATCGTGCGTGACATTAAGGAG-3′, and reverse, 5′-ACTGTGTTGGCGTACAGGTCTT-3′. The thermal cycling conditions used were as follows: 95°C for 15 min, then 40 cycles at 95°C for 20 sec, 58°C for 15 sec, and 72°C for 15 sec. Signals with a threshold cycle (Cq) value of >39 were considered to indicate no transcription of the target gene. The relative expression of mRNA was calculated using the 2−ΔΔCq method (25 (link)).
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