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26 protocols using 2 4 dinitrophenol

1

Cell Culture and Treatment Assays

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β-Naphthoflavone (BNF), DMSO, catalase, ubiquinol, ADP, sodium succinate, NADH, cytochrome C, lauryl maltoside, oligomycin, 2,4-dinitrophenol (DNP), rotenone, antimycin, CH223191, proadifen, and resveratrol were obtained from Sigma Chemical Co. (St Louis, MO). ROS probes 2′,7′–dichlorofluorescin diacetate (DCFDA) and Amplex Red reagents were purchased from Abcam (Cambridge, MA) and Invitrogen, (Carlsbad, CA), respectively. Rat C6 glioma and COS cells were purchased from American Type Culture Collection (ATCC) (Manassas, VA) and grown in DMEM/F12 or MDM2 media obtained from Invitrogen, (Carlsbad, CA). In all cases, cells were grown in culture medium supplemented with 10% fetal bovine serum, 1% penicillin-streptomycin at 5% CO2, and 95% air (v/v), at 37°C in the incubator. In some cases, cells were also treated for 24–48 hrs with BNF dissolved in dimethylsulfoxide (DMSO; 25–50 μM) in the presence or absence of resveratrol (10 μM), Mito-CP (2 μM), AHR inhibitor CH223191 (25 μM), and CYP inhibitor proadifen (5 μM), whereas the control cells were treated with vehicle alone.
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2

Western Blot and Immunostaining Techniques

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Anti-Pan-Actin (#4968), Anti-ERK1/2 (#9102), anti-pERK1/2 Thr 202/Tyr204 (#9101), anti-AKT (#4685), anti-pAKT Ser473 (#9271 all from Cell Signaling), anti-FATP3 (Proteintech 12943-1-AP), anti-FATP4 (Abnova H00010999-M01), anti-PKC-θ (BD Transduction lab 610089), anti-Na,K ATPase A1 (Novus Biologicals NB300-146SS) and anti-HIBADH (Proteintech 13466-1-AP) antibodies were used for Western blot (1:1000 dilution). Anti-Occludin-1 (Abcam ab31721) and anti-Calnexin (Thermo MA3-27) antibodies were used for immunostaining (1:200 dilution). Mitotracker® Red CMXRos (Cell Signaling 9082S) was used for mitochondria staining. Sulfo-N-succinimidyl Oleate (sc-208408) was purchased from Santa Cruz. Akt VIII (#124018) was purchased from Calbiochem. CHC (#5029) was purchased from Tocris. Recombinant VEGFA (#293-VE-010) and VEGFB (#767-VE-010) were purchased from R&D systems. Human insulin (Humulin R U-100) was purchased from Harvard Drug Group (#821501). Membrane filters (MWCO 3 kDa #Z677094), Calcimycin (#C9275), 2,4-Dinitrophenol (#D198501), 2-deoxyglucose (#D8375), activated charcoal (#C4386) and other chemicals were purchased from Sigma unless otherwise stated.
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3

Electrophysiological Characterization of hESC-VCMs

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The KATP channel currents and action potentials were recorded by whole-cell patch-clamp studies in hESC-VCMs at 37 °C using the EPC10 amplifier and Pulse/PulseFit software (HEKA, Germany) as previously described12 (link). Patch electrodes (3.0–5.0 MΩ) were filled with the internal pipette solution containing 120 mM potassium glutamate, 25 mMKCl, 1 mM ATP (magnesium salt), 10 mM EGTA, 0.5 mM MgCl2 and 10 mM HEPES (pH 7.2). The external bath solution contained 140 mMNaCl, 5 mMKCl, 1 mM MgCl2, 1 mM CaCl2 and 10 mM HEPES (pH 7.4). Glibenclamide (Sigma-Aldrich), diazoxide (Sigma-Aldrich), 2, 4-dinitrophenol (Sigma-Aldrich) and P1075 (Santa Cruz Biotechnology) were dissolved in DMSO before they were added to experimental solutions. Sodium cyanide (Sigma-Aldrich), 5-hydroxydecanoic acid (Sigma-Aldrich) and HMR 1098 (Axon Medchem BV) were dissolved directly in external bath solution.
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4

Mitochondrial Respiration Assay

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Pyruvate, malate, ethylene glycol tetraacetic acid (EGTA; Cat# E4378), ADP (Cat# A5285), oligomycin (Cat# 75351) and 2,4-dinitrophenol (Cat# D198501) were purchased from Sigma (St. Louis, MO, USA). Tetraphenylphosphonium chloride (Cat# 88060) was from Fluka (Buchs, Switzerland). Percoll (Cat# 17089101) was from GE Healthcare Bio-Sciences (Pittsburgh, PA, USA). Bovine serum albumin (BSA), free from free fatty acids (Cat# 152401), was from MP Biomedicals (Irvine, CA, USA). All materials were purchased no more than 6 months before use.
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5

Asphaltene Extraction from Turkish Crude Oil

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Potassium hydroxide (KOH, ≥ 85%), silver nitrate (AgNO3, ≥99.5%), ammonium hydroxide (NH4OH, 30-33% NH3), hydrochloric acid (HCl(aq), 36.38%), 2,4-dinitrophenol (DNP, ≥98%) and n-heptane (≥99% HPLC) were provided by Sigma Aldrich, and 4-nitrophenol (PNP) and 2,4,6-trinitrophenol (TNP) were provided by Merck. Asphaltene was extracted from Turkish crude oil supplied from the West Raman region located in Batman. In the experiments, deionized water, produced by the Nuve ND 4 water distiller with storage tank, was used.
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6

Synthesis and Characterization of Functionalized Graphite

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Alfa Aesar (Ward Hill, MA): graphite (325
mesh, 99%); sodium phosphate tribasic, anhydrous 100 mesh powder;
Sigma-Aldrich (Milwaukee, MI): acetonitrile (HPLC grade, ≥99%);
methanol (HPLC grade, ≥99%); glycidyltrimethylammonium chloride
(technical, ≥90%); Sigma-Aldrich (St Louis, MO): sodium azide
(≥99.5%); 2,4-dinitrophenol (DNP, 5000 μg mL–1 in methanol); sulfuric acid (95.0–98.0%); Sigma-Aldrich (Darmstadt,
Germany): hydrogen peroxide solution (30% w/w); Fisher Scientific
(Pittsburgh, PA): sodium hydroxide (97.9+%), hydrochloric acid (37.1%);
Fisher Scientific (Fair Lawn, NJ): sodium bicarbonate (99.7%); ACROS
(New Jersey, US): sodium phosphate dibasic, anhydrous; Corigin Solutions,
LLC (Merced, CA): almond shell char; Alfa Aesar (Heysham, UK): 2,4-dinitroanisole
(DNAN, 98%); powdered activated carbon (PAC; Norit D10). Deionized
water (18.2 MΩ cm) was obtained from a Millipore milli-Q-plus
water purification system. All chemicals were used as received.
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7

Evaluating Efflux Pump Inhibitor Potency

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Five efflux pump inhibitors: Verapamil (VER), Carbonyl cyanide m-chlorophenylhydrazone (CCCP), Chloropromazine (CPZ), Reserpine (RES) and 2,4-Dinitro phenol (DNP), and INH drug were purchased from Sigma-Aldrich (St. Louis, MO, USA). VER and INH were dissolved in distilled water and CCCP, CPZ, DNP, and RES were dissolved in dimethyl sulfoxide. Middlebrook 7H9 broth and oleic albumin dextrose catalase were purchased from Becton Dickinson (BD Biosciences, USA). Microtiter 96-well plates were purchased from (Nunc, Denmark). The bacterial suspension was prepared in 7H9-S broth of No. 1 McFarland standard. A stock solution of 0.02% resazurin was prepared in distilled water, filtered through a syringe with a membrane sterilized filter of pore size 0.22 μm and kept at 4°C.
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8

Biochemical Assays and Inhibitors

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Bicinchoninic acid (BCA), methylglyoxal (MGO), crystal violet, 2–4 Dinitrophenol (DNP), fluorescein isothiocyanate-dextran (FITC-Dextran), mannitol, N-acetyl-L-cysteine (NAC), HEPES, oligomycin, F1F0-ATP synthase inhibitor, rotenone, carbonyl cyanide 4-(trifluoromethoxy)phenylhydrazone (FCCP), antimycin A, superoxide dismutase (SOD), 2,4,6-trinitrobenzene sulfonate (DTNB), xanthine, xanthine oxidase, cytochrome c, dichlorodihydrofluorescein-diacetate (H2DCF-DA) and 5,5′-Dithiobis(2-nitrobenzoic acid) (DTNB) were all purchased from Sigma-Aldrich (St. Louis, MO).
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9

Pharmacological Modulation of Metabolism in Mice

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All mice were bred and cared for as described previously under the supervision of the Institutional Animal Care and Use Committee (IACUC) at UCSD.1 (link)Chemicals such as 2,4-dinitrophenol (DNP; 8 mg/kg, Sigma, St Louis, MO, USA), BADGE (80 mg/kg, Sigma), NAC (80 mg/kg, Sigma), and cyclosporine A (CSA; 60 mg/kg, LC Laboratories, Woburn, MA, USA) were injected to 3-week-old mice intraperitoneally (i. p.) every other day for 7 days. The final injection volume was adjusted to 50 μl with 0.9% sodium chloride. For starvation experiments, 3-week-old mice were deprived of food for 3 days with water.
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10

Comprehensive Metabolic Profiling Assay

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Sodium acetate (Sigma-Aldrich, S2889), C646 (Sigma-Aldrich, SML0002), orlistat (Cayman, 10005426), ACSS2 inhibitor (Millipore, 533756), mithramycin A (Cayman, 11434), pentamidine (Cayman, 20679), 14C2-acetic acid, (Perkin Elmer, NEC553050UC), 2-deoxyglucose (Sigma-Aldrich, D8375), 2,4-dinitrophenol (Sigma-Aldrich, D198501), rotenone (Sigma-Aldrich, cat. no. R8875), DAPI (Invitrogen, P36935), Turbofect transfection reagent (Thermo Fisher, R0532), DharmaFECT 1 transfection reagent (Horizon Discovery, T-2001), Nile red (Thermo Fisher, N1142), protein G magnetic beads (Thermo Fisher, 10004D), dispase II (Sigma-Aldrich, D4693), delipidated serum (Biowest, S181L), TRIzol (Thermo Fisher, 15596026), MG132 (EMD Millipore, 474790), PowerUP SYBR Green Mastermix (Applied Biosystems, A25742), MTT (Sigma-Aldrich, M2128), HA-magnetic beads (Thermo Fisher, 88836).
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