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16 protocols using ab56357

1

Ploidy Analysis of Mouse Cardiomyocytes

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Adult mouse hearts were cryo-sectioned on a longitudinal axis. Both mouse and human tissue was stained with cardiac troponin I (Invitrogen H3570 1:400) and Hoechst (Abcam ab56357 1:400). The images were taken with a Nikon A1 confocal microscope using the same setting of laser power, voltage, offset, and pinhole across the board. Z-stack images were taken with 1 μ m for each step, with approximately 30–40 steps per section. The individual nucleus was reconstituted by image analysis software, Elements (Nikon Instruments), equipped with a 3D volume module from Nikon, and the sum intensity of the DAPI channel was analyzed by a 3D binary mask. To calculate ploidy, we used non-cardiomyocytes from the same photomicrograph as reference cells to determine the intensity of diploid nuclei. Ploidy values were then transferred to GraphPad Prism to generate a frequency distribution histogram, which was represented as the best fitting curve.
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2

Immunocytochemical Analysis of Induced Pluripotent Stem Cell-Derived Cardiomyocytes

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Human iPS cell-derived cardiomyocytes (iCell Cardiomyocytes2 (link)) and cardiac progenitors were fixed with 4% formaldehyde in PBS and permeabilized using PBS containing 0.1% Triton X-100 (Sigma Aldrich) and 3% non-fat milk. Cardiac Troponin I (Abcam, ab56357, 1:200 dilution) and NKX2.5 (Abcam, ab35842, 1:200 dilution) were incubated in a permeabilization buffer at 4 °C overnight. The following day, nuclei were labeled with 0.1 μg/mL DAPI along with secondary antibodies (Thermo Fisher Scientific, a21467 or a11010, 1:500 dilution) in PBS. Cardiac Troponin I, NKX2.5, and DAPI were imaged accordingly on a Nikon A1R Spectral Scanning Confocal Microscope at RT.
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3

Cardiac Tissue Cryosectioning and Immunostaining

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Hearts were perfused with 4% (W/v) PFA in PBS after observation with two-photon microscopy. After perfusion, hearts were excised and immediately embedded in Tissue-Tek OCT cryo-embedding compound (Miles Laboratories). Cryostat sections along the long axis at 5 μm were fixed with 4% (W/v) PFA in PBS and incubated with primary antibody (anti-Troponin I antibody; ab56357, Abcam, 1:200) over night after blocking with 3% bovine serum albumin. After washing with PBS, samples were stained with appropriate secondary antibody (anti-goat IgG- Alexa 488 1:200) for 1 h. The nuclei of the cells were counterstained with TO-PRO-3 iodide 642/661 (Molecular Probes, 1:5000), respectively. Images of samples were acquired using LSM 700 confocal microscope (Carl Zeiss).
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4

Cardiomyocyte Immunostaining Protocol

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On day 28 after differentiation, all cardiomyocyte lines were seeded on gelatin‐coated glass coverslips cultured with DMEM/10% fetal bovine serum with Y‐27632 for 24 hours. Immunostaining was performed using goat anti‐cTnI (Abcam, ab56357; 1:300) and rabbit anti‐cTnT (cardiac troponin T; Abcam, ab209813; 1:300) as primary antibodies and Alexa Fluor 488 donkey antigoat IgG (Thermo Fisher Scientific, A11055; 1:500) and Alexa Fluor 647 donkey antirabbit IgG (Thermo Fisher Scientific, A31573; 1:500) as secondary antibodies. Cells were washed with PBS, fixed with 4% paraformaldehyde for 15 minutes, and permeabilized with PBS containing 0.5% Triton‐X‐100 (Sigma‐Aldrich) for 15 minutes. Cells were then blocked with 5% fetal bovine serum in PBS for 30 minutes and were subsequently incubated overnight at 4 °C with primary antibodies. The following day, secondary antibodies and Hoechst 33342 (1:1000, Dojindo) were used to visualize the primary antibodies and nuclei, respectively. After immunostaining was completed, glass coverslips were stuck to slide glasses with ProLong Gold antifade reagent (P10144, Thermo Fisher Scientific). Cells were observed using a FV3000 microscope (Olympus) with a ×100 objective lens.
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5

Immunofluorescence Analysis of Neonatal Rat Cardiomyocytes

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Rat neonatal CMs were fixed in 4% paraformaldehyde. Anti-cardiac troponin I (CTNI) 1:500 (ab56357, Abcam) and anti-PKM2 1:100 (D78A4, Cell Signaling) were used. After washing with PBS, samples were stained with Alexa-568, Alexa-488 or Alexa-647 secondary antibodies 1:500 (Life Technologies), followed by 4′,6-Diamidine-2′-phenylindole dihydrochloride (DAPI) 1:2000 (Merck) staining to visualize DNA.
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6

Immunostaining and Western Blotting of Embryonic and Postnatal Mouse Hearts

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For immunostaining, E8.5 mouse embryos were fixed with 4% paraformaldehyde. Antibodies against ASB2 1:100 (HPA001546, Sigma) and anti-cTnI 1:500 (ab56357, Abcam) were used. For western blotting, E8.5, E14.5, P1 and P7 mouse hearts were isolated. Antibodies against TCF3 1:1,000 (G-2, Santa Cruz Biotechnology) were used.
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7

Zebrafish Heart Regeneration Immunohistochemistry

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Zebrafish heart sections and RNCMs were fixed in 4% paraformaldehyde. Anti‐MEF2 1:50 (sc‐313, Santa Cruz Biotechnology), anti‐PCNA 1:500 (PC10, Santa Cruz Biotechnology), anti‐N2.261 1:100 (N2.261, DSHB), anti‐DsRed 1:500 (632496, Takara), anti‐MHC 1:500 (MF20, DSHB), anti‐phospho‐histone H3 1:200 (06‐570, EMD Millipore), and anti‐cardiac troponin I (CTNI) 1:500 (ab56357, Abcam) were used. After washing with PBS, samples were stained with Alexa 568, Alexa 488, or Alexa 647 secondary antibodies 1:500 (Life Technologies), followed by 4′,6‐diamidine‐2′‐phenylindole dihydrochloride (DAPI) 1:2,000 (Merck) staining to visualize DNA. To count PCNA+, N2.261+, or pHH3+ CMs in regenerating ventricles, we analyzed more than three sections from each heart. Acid Fuchsin Orange G (AFOG) staining was performed using the A.F.O.G. Kit (BIOGNOST).
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8

Immunofluorescence Staining of Cardiomyocytes

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Cardiomyocytes were washed with DPBS and fixed with 4% paraformaldehyde for 15 min at room temperature. Samples were washed and permeabilized (0.5% Triton X-100 in phosphate buffered saline [PBS]), followed by incubation with blocking buffer (5% bovine serum albumin [BSA], 0.2% Tween-20 in PBS). Samples were incubated with primary antibody overnight at 4 °C. The following antibodies were used at the indicated dilution: anti-sarcomeric α-actinin (abcam, ab9465, 1:500); anti-cardiac troponin-I (abcam, ab56357, 1:500); anti-connexin 43 (abcam, ab11370, 1:250). Secondary antibody incubation was performed for 1 h at room temperature: donkey anti-mouse Alexa Fluor 647 (1:500); donkey anti-rabbit Alexa Fluor 488 (1:500); donkey anti-goat Alexa Fluor 594 (1:500). All antibodies were diluted in blocking buffer. Samples were counterstained with 4′,6-diamidino-2-phenylindole (DAPI) and mounted onto glass slides using Fluoromount G. Images were acquired using a laser scanning confocal microscope (LSM 800, Zeiss) equipped with a 20x Plan-APOCHROMAT and a 63x Plan-APOCHROMAT oil immersion objective (both Zeiss).
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9

Quantifying Cardiac Cell Proliferation

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One LV short-axis section (10 μm thickness) at the level of the mid-lower papillary muscles was chosen for each heart. First, the slides were washed with PBS and fixed with 4% PFA for 10 min. The samples were then permeabilized with 0.5% PBS-Tween for 15 min, followed by blocking for 1 h with 10% fetal bovine serum. The sections were then stained with anti-cardiac troponin I primary antibody (1:200, Abcam, Cat: ab56357), along with a primary antibody for Ki-67 (1:100, Abcam, Cat: ab15580) or aurora B kinase (AurB, 1:100, Abcam, Cat: ab2254) for 90 min at 37 °C. The slides were then washed in PBS, and appropriate secondary antibodies (1:200, Abcam, Cat: ab150064 or ab150129) were applied for 45 min. Finally, the sections were incubated with DAPI (NucBlue Fixed Cell ReadyProbes Reagent, ThermoFisher Scientific, Cat: R37606) for 5 min and washed again. Microscope coverslips (Fisherbrand, Cat: 12545F, Pittsburgh, PA, USA) were added and the slides were kept at 4 °C until ready for imaging.
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10

Immunohistochemical Analysis of Cardiac Tissue

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Tissues were fixed in 4% paraformaldehyde overnight, cryoprotected by overnight incubation in 30% sucrose, and embedded in tissue freezing medium (VWR, 25608-930). 8 µm cryosections were obtained using a cryostat (Thermo Scientific, Micron HM 550). Sections and cells were incubated in blocking medium (PBS containing 5% donkey serum, 0.2% Triton X-100) at 4 °C overnight. For immunostaining, sections were incubated with primary antibodies at 4 °C overnight and secondary antibodies for 2 h. Primary antibodies used were as follow: aYAP1 (1:200, Abcam, ab205270), Ki67 (1:200, Abcam, ab16667), γ-H2AX (1:200, Abcam, ab81299), ACTN2 (1:200, Abcam, ab137346), cardiac troponin I (1:200, Abcam, ab56357), ATP5B (ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit; 1:200, Abcam, ab14730), MFN1 (1:200, Abcam, ab104274), DRP1 (1:200, ProteinTech, 12957-1-AP), and 4HNE (1:200, Abcam, ab46545). After washing with blocking buffer, the slices were incubated with optimal secondary antibodies with/without WGA and/or DAPI at room temperature for 2h. After washing, samples were mounted with ProLong Diamond antifade mountant (Invitrogen, 36961) and imaged using an Olympus FV1000 confocal microscope. Laser scanning confocal microscope (Olympus, FV1000) were taken to determine confocal fluorescence images. Fluorescence intensity and cell size were measured by ImageJ.
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