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14 protocols using u2932

1

Culturing Burkitt's and DLBCL Cell Lines

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Burkitt's lymphoma‐derived cell line Daudi was cultured as described previously.46 The DLBCL‐derived cell lines, SUDHL‐6, OCI‐Ly3 and U2932, were obtained from the German Collection of Microorganisms and Cell Cultures (DSMZ), and cultured according to the instructions. The mycoplasma test was performed using a PCR detection kit (TaKaRa‐Bio, Shiga, Japan).
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2

Cell Culture of Lymphoma Lines

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Jeko-1, Mino, Daudi, U-2932, Raji, and Ramos cell lines were obtained from the German Collection of Microorganisms and Cell Cultures or the American Type Culture Collection and cultured in standard medium.
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3

Sourcing and Culturing DLBCL Cell Lines

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Fresh-frozen biopsies of histologically confirmed DLBCL samples were identified in the pathology archive at Leiden University Medical Center (LUMC). The study was approved by the Scientific Review Committee of the LUMC Department of Hematology under an applicable waiver of consent by the LUMC Ethical Committee (B16.048).
DLBCL cell lines OCI-Ly3 (RRID:CVCL_8800), TMD8 (RRID:CVCL_A442), and U2932 (RRID:CVCL_1896) were obtained from the German Collection of Microorganisms and Cell Cultures. Phoenix cells (RRID:CVCL_H717) were cultured at 5% CO2 in Iscove’s Modified Dulbecco’s Medium (IMDM; Lonza) supplemented with 10% fetal bovine serum (FBS; Bodinco), 3 mM L-glutamine (Lonza), 100 U/ml penicillin/streptomycin (Lonza). TKO cells were used, which are generated from the Oct cell line (RRID:CVCL_WN86) that originates from transformed murine pre-B cells from Slp65−/− mice. The TKO cell line has a Rag2 and Lambda5 KO. These cells were cultured at 7% CO2 in Iscove’s Basal Medium (Merck) supplied with 5% FBS (PAN BioTech), 3 mM L-glutamine, 100 U/ml penicillin/streptomycin, 50 mM 2-mercaptoethanol (Sigma-Aldrich; Merck), and IL-7–containing supernatant of mouse plasmacytoma cells J558L (RRID:CVCL_3949), stably transfected with a murine IL-7 expression vector (Meixlsperger et al., 2007 (link)).
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4

B-cell Lymphoma Cell Line Cultures

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The following human B-cell lymphoma cell lines were used for culture: three Burkitt's lymphoma cell lines (BJAB, Raji, Daudi), one germinal center type DLBCL line (Toledo), and three activated B-cell type DLBCL cell lines (Riva, U2932, and OCI-Ly10). Toledo, Daudi and Raji were purchased from ATCC (Rockville, MD), and Riva and U2932 from DSMZ (Braunschweig, Germany). BJAB cells were obtained from Dr. W.S. Kim (Sungkyunkwan University) and OCI-Ly10 from Dr. Y.K. Jeon (Seoul National University Hospital). Patient-derived primary cells were acquired from malignant pleural effusion or ascites of patients with DLBCL. Seven patients had refractory disease whereas one patient achieved complete response to the 1st line chemotherapy. Cells were cultured in RPMI 1640 supplemented with heat-inactivated 10% fetal bovine serum, penicillin and streptomycin (Gibco BRL, Grand Island, NY), except OCI-Ly10, which was cultured in Iscove's modified Dulbecco's medium.
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5

Cell Line Maintenance and Validation

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RI-1, also known as RIVA, U2932, NU-DHL-1 cell lines were purchased from DSMZ. SU-DHL-4, SU-DHL-6 were purchased from ATCC. All lines were cultured in RPMI 1640 with L-Glutamine (ThermoFisher),10% fetal bovine serum (Thermofisher), at 37 degrees Celsius, 5% CO2. OCI-LY10 cells, obtained from University Health Network, Ontario, Canada, were cultured in Iscove’s Modified Dulbecco’s medium (Thermofisher) with 20% human serum (Valley Biomedical). IMPACT III testing (IDEXX Bioresearch) was carried out on cell lines to confirm mycoplasma- and pathogen-free status. Cell lines were expanded and cryopreserved following 2–3 passages after obtaining from vendor. After thawing, cells were maintained (for experiments, xenografting) for a maximum of 8 weeks by sub-culturing approximately 3 times a week.
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6

Characterization of B-cell Lymphoma Lines

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For studies performed at ImmunoGen, the U-2932, SU-DHL-4, DOHH-2, OCI-Ly18, and OCI-Ly7 lines were obtained from DSMZ; the Farage cell line was purchased from ATCC. All lines were characterized by the vendor using routine DNA profiling; no further authentication was performed by the authors. Cells were expanded and maintained as recommended in a humidified 37 °C, 5% CO2 incubator. All cell lines show membrane expression of both CD20 and CD37.
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7

Cell Lines and Primary Cell Isolation

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Jurkat E6.1 T lymphocytes, Hela, HEK293T and MCF7 cells were purchased from American Type Culture Collection (ATCC). U2932, SUDHL4, BJAB, RIVA, OCI-LY3, and OCI-LY19 cells were acquired from DSMZ. HBL1, HLY1 and TMD8 cells were kindly provided by Martin Dyer, Pierre Brousset, and Daniel Krappmann, respectively. Blood was obtained from healthy donors (Etablissement Français du Sang). Peripheral blood mononuclear cells (PBMC) were acquired by Ficoll density gradient. Primary CD4 + and CD8 + T cells were subsequentially isolated from PBMC using REAlease CD4 and CD8 microbeads kits, from Miltenyi as manufacturer's instructions. Cell viability was assessed using CellTiter-Glo following manufacturer's instructions (Promega) following stimulation with 10 ng/mL TNFα (R&D systems) for 24h.
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8

Culturing ABC-type DLBCL Cell Lines

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ABC-type DLBCL cell lines, U2932, OCI-LY3, and RCK8 were purchased from DSMZ and were grown in a RPMI1640 medium supplemented with 10% FBS without antibiotics and kept in a 37°C, 5% CO2 incubator. All cell lines were Mycoplasma free tested with MycoAlert mycoplasma detection kit (LONZA). ABC-type DLBCL cell lines were chosen because of their high miR-155 expression, compared with normal CD19+ B cells.
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9

Anticancer Cell Line Panel Evaluation

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Four human cancer cell lines were used, comprising two different cell lines that are sensitive to each of the anticancer agents used, as follows: VCR or OXP. The sensitivity of each cancer cell line to chemotherapy agents was based on the literature, the DepMap, and the “Genomics of drugs and sensitivity of cancers” (GDSC) databases. The cell lines used are as follows:

Two diffuse large B-cell lymphoma cell lines, SU-DHL-4 (ATCC® CRL-2957™, ATCC, Manassas, VA, USA) and U-2932 (DSMZ® ACC633), sensitive to VCR (suspension cell culture).

Two colorectal cancer cell lines, HT29 (ATCC® HTB-38™) and HCT116 (ATCC® CCL-247™), sensitive to OXP (adherent cell culture),

Cell lines were cultured in the medium recommended by ATCC®. Culture media were supplemented with 10% heat-inactivated fetal bovine serum, 1% L-glutamine, 1% non-essential amino acids, and 1% penicillin/streptomycin (Gibco, Waltham, MA, USA). All cells were grown at 37 °C in a humidified air atmosphere containing 5% CO2.
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10

Cell Culture Protocol for Lymphoma Lines

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The human cell lines, BL-41, GRANTA-519, DAUDI, REC-1, SU-DHL-4, U2932, SC-1, MINO, K562, and MAVER-1 were obtained from DSMZ. J76 was a kind gift from M. Heemskerk (Leiden University Medical Center, the Netherlands). EBV-transformed B cell lines were generated in house. The cells were cultured in RPMI 1640 (PAA, Paschung, Austria) and supplemented with 10% fetal calf serum (FCS, PAA) and 50 μg/ml Gentamycin (Thermo Fischer, Oslo, Norway). The Phoenix-AMPHO (CRL-3213) cell line was purchased from ATCC (Manassas, VA, USA) and was maintained in Dulbecco's modified Eagle's medium (Sigma-Aldrich, Oslo, Norway) supplemented with 10% FCS and 50 μg/ml Gentamycin.
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